miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28927 5' -52.8 NC_006146.1 + 15287 0.67 0.957705
Target:  5'- aCUUCA-CCuc-CAGGGCCCACAucauGGGa -3'
miRNA:   3'- -GAGGUaGGuuaGUUCCGGGUGU----UCCa -5'
28927 5' -52.8 NC_006146.1 + 21443 0.67 0.957705
Target:  5'- aCUUCA-CCuc-CAGGGCCCACAucauGGGa -3'
miRNA:   3'- -GAGGUaGGuuaGUUCCGGGUGU----UCCa -5'
28927 5' -52.8 NC_006146.1 + 24521 0.67 0.957705
Target:  5'- aCUUCA-CCuc-CAGGGCCCACAucauGGGa -3'
miRNA:   3'- -GAGGUaGGuuaGUUCCGGGUGU----UCCa -5'
28927 5' -52.8 NC_006146.1 + 27599 0.67 0.957705
Target:  5'- aCUUCA-CCuc-CAGGGCCCACAucauGGGa -3'
miRNA:   3'- -GAGGUaGGuuaGUUCCGGGUGU----UCCa -5'
28927 5' -52.8 NC_006146.1 + 18365 0.67 0.957705
Target:  5'- aCUUCA-CCuc-CAGGGCCCACAucauGGGa -3'
miRNA:   3'- -GAGGUaGGuuaGUUCCGGGUGU----UCCa -5'
28927 5' -52.8 NC_006146.1 + 16125 0.67 0.953774
Target:  5'- aUCC-UCCGAgacUCcGGGCCC-CAAGGc -3'
miRNA:   3'- gAGGuAGGUU---AGuUCCGGGuGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 13047 0.67 0.953774
Target:  5'- aUCC-UCCGAgacUCcGGGCCC-CAAGGc -3'
miRNA:   3'- gAGGuAGGUU---AGuUCCGGGuGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 104624 0.67 0.953774
Target:  5'- -aCUAUCUGAUCAggAGGaCCCGCGAGa- -3'
miRNA:   3'- gaGGUAGGUUAGU--UCC-GGGUGUUCca -5'
28927 5' -52.8 NC_006146.1 + 28437 0.67 0.953774
Target:  5'- aUCC-UCCGAgacUCcGGGCCC-CAAGGc -3'
miRNA:   3'- gAGGuAGGUU---AGuUCCGGGuGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 25359 0.67 0.953774
Target:  5'- aUCC-UCCGAgacUCcGGGCCC-CAAGGc -3'
miRNA:   3'- gAGGuAGGUU---AGuUCCGGGuGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 22281 0.67 0.953774
Target:  5'- aUCC-UCCGAgacUCcGGGCCC-CAAGGc -3'
miRNA:   3'- gAGGuAGGUU---AGuUCCGGGuGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 19203 0.67 0.953774
Target:  5'- aUCC-UCCGAgacUCcGGGCCC-CAAGGc -3'
miRNA:   3'- gAGGuAGGUU---AGuUCCGGGuGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 142125 0.67 0.952959
Target:  5'- cCUCCGUCCucuggacuaGGGGCCCugggcccCGAGGg -3'
miRNA:   3'- -GAGGUAGGuuag-----UUCCGGGu------GUUCCa -5'
28927 5' -52.8 NC_006146.1 + 145203 0.67 0.952959
Target:  5'- cCUCCGUCCucuggacuaGGGGCCCugggcccCGAGGg -3'
miRNA:   3'- -GAGGUAGGuuag-----UUCCGGGu------GUUCCa -5'
28927 5' -52.8 NC_006146.1 + 148281 0.67 0.952959
Target:  5'- cCUCCGUCCucuggacuaGGGGCCCugggcccCGAGGg -3'
miRNA:   3'- -GAGGUAGGuuag-----UUCCGGGu------GUUCCa -5'
28927 5' -52.8 NC_006146.1 + 157515 0.67 0.952959
Target:  5'- cCUCCGUCCucuggacuaGGGGCCCugggcccCGAGGg -3'
miRNA:   3'- -GAGGUAGGuuag-----UUCCGGGu------GUUCCa -5'
28927 5' -52.8 NC_006146.1 + 151359 0.67 0.952959
Target:  5'- cCUCCGUCCucuggacuaGGGGCCCugggcccCGAGGg -3'
miRNA:   3'- -GAGGUAGGuuag-----UUCCGGGu------GUUCCa -5'
28927 5' -52.8 NC_006146.1 + 154437 0.67 0.952959
Target:  5'- cCUCCGUCCucuggacuaGGGGCCCugggcccCGAGGg -3'
miRNA:   3'- -GAGGUAGGuuag-----UUCCGGGu------GUUCCa -5'
28927 5' -52.8 NC_006146.1 + 118013 0.67 0.949603
Target:  5'- -aCCAUgCGGggcUCGGGGCgCGCGAGGa -3'
miRNA:   3'- gaGGUAgGUU---AGUUCCGgGUGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 102585 0.67 0.949603
Target:  5'- -gCCAUCCucUCGcGGCCCGagGAGGg -3'
miRNA:   3'- gaGGUAGGuuAGUuCCGGGUg-UUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.