miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28927 5' -52.8 NC_006146.1 + 28437 0.67 0.953774
Target:  5'- aUCC-UCCGAgacUCcGGGCCC-CAAGGc -3'
miRNA:   3'- gAGGuAGGUU---AGuUCCGGGuGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 25359 0.67 0.953774
Target:  5'- aUCC-UCCGAgacUCcGGGCCC-CAAGGc -3'
miRNA:   3'- gAGGuAGGUU---AGuUCCGGGuGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 62919 0.68 0.935116
Target:  5'- -aCCGUCUuugcccugucuguGGUCuccAGGGCCCugGAGGUc -3'
miRNA:   3'- gaGGUAGG-------------UUAG---UUCCGGGugUUCCA- -5'
28927 5' -52.8 NC_006146.1 + 56230 0.71 0.824207
Target:  5'- -gCCGUCCAGc--GGGUCCGCGGGGg -3'
miRNA:   3'- gaGGUAGGUUaguUCCGGGUGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 98552 0.66 0.973946
Target:  5'- -gCCAgCCGGUcCAGGGCCCAagcgAAGGc -3'
miRNA:   3'- gaGGUaGGUUA-GUUCCGGGUg---UUCCa -5'
28927 5' -52.8 NC_006146.1 + 27599 0.67 0.957705
Target:  5'- aCUUCA-CCuc-CAGGGCCCACAucauGGGa -3'
miRNA:   3'- -GAGGUaGGuuaGUUCCGGGUGU----UCCa -5'
28927 5' -52.8 NC_006146.1 + 19203 0.67 0.953774
Target:  5'- aUCC-UCCGAgacUCcGGGCCC-CAAGGc -3'
miRNA:   3'- gAGGuAGGUU---AGuUCCGGGuGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 87143 0.71 0.815406
Target:  5'- cCUCCcaCCAGgccacccacugcUCAcGGCCCACAGGGg -3'
miRNA:   3'- -GAGGuaGGUU------------AGUuCCGGGUGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 24521 0.67 0.957705
Target:  5'- aCUUCA-CCuc-CAGGGCCCACAucauGGGa -3'
miRNA:   3'- -GAGGUaGGuuaGUUCCGGGUGU----UCCa -5'
28927 5' -52.8 NC_006146.1 + 3900 0.71 0.80643
Target:  5'- -cCCA-CCGA-CGAGGCCCcCAAGGUc -3'
miRNA:   3'- gaGGUaGGUUaGUUCCGGGuGUUCCA- -5'
28927 5' -52.8 NC_006146.1 + 22281 0.67 0.953774
Target:  5'- aUCC-UCCGAgacUCcGGGCCC-CAAGGc -3'
miRNA:   3'- gAGGuAGGUU---AGuUCCGGGuGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 15287 0.67 0.957705
Target:  5'- aCUUCA-CCuc-CAGGGCCCACAucauGGGa -3'
miRNA:   3'- -GAGGUaGGuuaGUUCCGGGUGU----UCCa -5'
28927 5' -52.8 NC_006146.1 + 13047 0.67 0.953774
Target:  5'- aUCC-UCCGAgacUCcGGGCCC-CAAGGc -3'
miRNA:   3'- gAGGuAGGUU---AGuUCCGGGuGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 159056 0.68 0.93562
Target:  5'- -cCCAagcCCGAgaagCAGGGCCCggcGCAAGGg -3'
miRNA:   3'- gaGGUa--GGUUa---GUUCCGGG---UGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 46619 0.68 0.925052
Target:  5'- -gCCAggucuUCC-AUCAGGGCCUugGGGGc -3'
miRNA:   3'- gaGGU-----AGGuUAGUUCCGGGugUUCCa -5'
28927 5' -52.8 NC_006146.1 + 53099 0.71 0.849477
Target:  5'- cCUCCGUCUAGUCcggaggcGGCCCGgccCGGGGg -3'
miRNA:   3'- -GAGGUAGGUUAGuu-----CCGGGU---GUUCCa -5'
28927 5' -52.8 NC_006146.1 + 169412 0.66 0.981187
Target:  5'- uCUCCugggaggCCAcguGUgGAGGCCCGCGgagAGGc -3'
miRNA:   3'- -GAGGua-----GGU---UAgUUCCGGGUGU---UCCa -5'
28927 5' -52.8 NC_006146.1 + 148146 0.66 0.973946
Target:  5'- gCUUCGUgCUggUCAGGGCCC---GGGUc -3'
miRNA:   3'- -GAGGUA-GGuuAGUUCCGGGuguUCCA- -5'
28927 5' -52.8 NC_006146.1 + 59201 0.67 0.968422
Target:  5'- gCUCCAUCCug-CAGGGCUCccccaccuacgacucCAGGGa -3'
miRNA:   3'- -GAGGUAGGuuaGUUCCGGGu--------------GUUCCa -5'
28927 5' -52.8 NC_006146.1 + 108451 0.67 0.964531
Target:  5'- -cCCGUCCGuacCAAGGUCCACuagcccgGAGGc -3'
miRNA:   3'- gaGGUAGGUua-GUUCCGGGUG-------UUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.