miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28927 5' -52.8 NC_006146.1 + 28437 0.67 0.953774
Target:  5'- aUCC-UCCGAgacUCcGGGCCC-CAAGGc -3'
miRNA:   3'- gAGGuAGGUU---AGuUCCGGGuGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 33740 0.66 0.981187
Target:  5'- cCUCCgGUCCGGUgGguguGGUCCGCuGGGUc -3'
miRNA:   3'- -GAGG-UAGGUUAgUu---CCGGGUGuUCCA- -5'
28927 5' -52.8 NC_006146.1 + 33927 0.73 0.739486
Target:  5'- cCUCCGUCCGGUgGGugcGGUCCGCuGGGUc -3'
miRNA:   3'- -GAGGUAGGUUAgUU---CCGGGUGuUCCA- -5'
28927 5' -52.8 NC_006146.1 + 41046 0.67 0.96811
Target:  5'- -cCCGUCCg--CGGcGGCCCugGGGGc -3'
miRNA:   3'- gaGGUAGGuuaGUU-CCGGGugUUCCa -5'
28927 5' -52.8 NC_006146.1 + 46619 0.68 0.925052
Target:  5'- -gCCAggucuUCC-AUCAGGGCCUugGGGGc -3'
miRNA:   3'- gaGGU-----AGGuUAGUUCCGGGugUUCCa -5'
28927 5' -52.8 NC_006146.1 + 50265 0.67 0.964868
Target:  5'- aCUCuCGUCCuucGUCGGGGCCa--AGGGg -3'
miRNA:   3'- -GAG-GUAGGu--UAGUUCCGGgugUUCCa -5'
28927 5' -52.8 NC_006146.1 + 53099 0.71 0.849477
Target:  5'- cCUCCGUCUAGUCcggaggcGGCCCGgccCGGGGg -3'
miRNA:   3'- -GAGGUAGGUUAGuu-----CCGGGU---GUUCCa -5'
28927 5' -52.8 NC_006146.1 + 54033 0.7 0.880247
Target:  5'- cCUCCGgagggcggCCAugucggcggugGUCAGGGCCCACcuGGc -3'
miRNA:   3'- -GAGGUa-------GGU-----------UAGUUCCGGGUGuuCCa -5'
28927 5' -52.8 NC_006146.1 + 56230 0.71 0.824207
Target:  5'- -gCCGUCCAGc--GGGUCCGCGGGGg -3'
miRNA:   3'- gaGGUAGGUUaguUCCGGGUGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 59201 0.67 0.968422
Target:  5'- gCUCCAUCCug-CAGGGCUCccccaccuacgacucCAGGGa -3'
miRNA:   3'- -GAGGUAGGuuaGUUCCGGGu--------------GUUCCa -5'
28927 5' -52.8 NC_006146.1 + 61513 0.68 0.930462
Target:  5'- -gCCGUCCGAUCAgggAGGCCUccggugucCGGGGg -3'
miRNA:   3'- gaGGUAGGUUAGU---UCCGGGu-------GUUCCa -5'
28927 5' -52.8 NC_006146.1 + 62919 0.68 0.935116
Target:  5'- -aCCGUCUuugcccugucuguGGUCuccAGGGCCCugGAGGUc -3'
miRNA:   3'- gaGGUAGG-------------UUAG---UUCCGGGugUUCCA- -5'
28927 5' -52.8 NC_006146.1 + 67382 0.77 0.532636
Target:  5'- aUCCAUCU-AUCGGGGCCUACAGGa- -3'
miRNA:   3'- gAGGUAGGuUAGUUCCGGGUGUUCca -5'
28927 5' -52.8 NC_006146.1 + 73589 0.72 0.797289
Target:  5'- uCUCC-UCCGGUCGA-GCUCACGGGGc -3'
miRNA:   3'- -GAGGuAGGUUAGUUcCGGGUGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 74719 0.66 0.971134
Target:  5'- gCUCagggCCAga-AAGGCCCugGAGGg -3'
miRNA:   3'- -GAGgua-GGUuagUUCCGGGugUUCCa -5'
28927 5' -52.8 NC_006146.1 + 83516 0.71 0.841251
Target:  5'- uCUCCuggcgcaggguUCUGAUCAGGGCCCACAGc-- -3'
miRNA:   3'- -GAGGu----------AGGUUAGUUCCGGGUGUUcca -5'
28927 5' -52.8 NC_006146.1 + 84452 0.69 0.894265
Target:  5'- cCUCCuaagcUCCAAguUCAAGGCCUuuuGCAaguGGGUg -3'
miRNA:   3'- -GAGGu----AGGUU--AGUUCCGGG---UGU---UCCA- -5'
28927 5' -52.8 NC_006146.1 + 84982 0.67 0.96811
Target:  5'- -gCCAUCC-----AGGCCC-CAGGGUa -3'
miRNA:   3'- gaGGUAGGuuaguUCCGGGuGUUCCA- -5'
28927 5' -52.8 NC_006146.1 + 85427 0.69 0.919392
Target:  5'- -aCCAgCCAggccGUgAAGGCCCugAGGGa -3'
miRNA:   3'- gaGGUaGGU----UAgUUCCGGGugUUCCa -5'
28927 5' -52.8 NC_006146.1 + 86295 0.68 0.929932
Target:  5'- cCUCUGUCCGG-CAuggcuggaguaggAGGCCCuggGCAGGGUc -3'
miRNA:   3'- -GAGGUAGGUUaGU-------------UCCGGG---UGUUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.