Results 21 - 40 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28927 | 5' | -52.8 | NC_006146.1 | + | 84452 | 0.69 | 0.894265 |
Target: 5'- cCUCCuaagcUCCAAguUCAAGGCCUuuuGCAaguGGGUg -3' miRNA: 3'- -GAGGu----AGGUU--AGUUCCGGG---UGU---UCCA- -5' |
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28927 | 5' | -52.8 | NC_006146.1 | + | 103968 | 0.69 | 0.894265 |
Target: 5'- aCUCUcgCCGcaggaaGUC-AGGCCCACAuccAGGUu -3' miRNA: 3'- -GAGGuaGGU------UAGuUCCGGGUGU---UCCA- -5' |
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28927 | 5' | -52.8 | NC_006146.1 | + | 143298 | 0.69 | 0.900916 |
Target: 5'- cCUCCca-UGAUguGGGCCCugGAGGUg -3' miRNA: 3'- -GAGGuagGUUAguUCCGGGugUUCCA- -5' |
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28927 | 5' | -52.8 | NC_006146.1 | + | 168141 | 0.69 | 0.900916 |
Target: 5'- --aCAUCCGGgcuuGGGCCUGCGAGGg -3' miRNA: 3'- gagGUAGGUUagu-UCCGGGUGUUCCa -5' |
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28927 | 5' | -52.8 | NC_006146.1 | + | 146376 | 0.69 | 0.900916 |
Target: 5'- cCUCCca-UGAUguGGGCCCugGAGGUg -3' miRNA: 3'- -GAGGuagGUUAguUCCGGGugUUCCA- -5' |
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28927 | 5' | -52.8 | NC_006146.1 | + | 149454 | 0.69 | 0.900916 |
Target: 5'- cCUCCca-UGAUguGGGCCCugGAGGUg -3' miRNA: 3'- -GAGGuagGUUAguUCCGGGugUUCCA- -5' |
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28927 | 5' | -52.8 | NC_006146.1 | + | 152532 | 0.69 | 0.900916 |
Target: 5'- cCUCCca-UGAUguGGGCCCugGAGGUg -3' miRNA: 3'- -GAGGuagGUUAguUCCGGGugUUCCA- -5' |
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28927 | 5' | -52.8 | NC_006146.1 | + | 155610 | 0.69 | 0.900916 |
Target: 5'- cCUCCca-UGAUguGGGCCCugGAGGUg -3' miRNA: 3'- -GAGGuagGUUAguUCCGGGugUUCCA- -5' |
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28927 | 5' | -52.8 | NC_006146.1 | + | 125681 | 0.69 | 0.907322 |
Target: 5'- cCUCCGUCCGGUUccAGaGUCCGgGAGGg -3' miRNA: 3'- -GAGGUAGGUUAGu-UC-CGGGUgUUCCa -5' |
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28927 | 5' | -52.8 | NC_006146.1 | + | 85427 | 0.69 | 0.919392 |
Target: 5'- -aCCAgCCAggccGUgAAGGCCCugAGGGa -3' miRNA: 3'- gaGGUaGGU----UAgUUCCGGGugUUCCa -5' |
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28927 | 5' | -52.8 | NC_006146.1 | + | 46619 | 0.68 | 0.925052 |
Target: 5'- -gCCAggucuUCC-AUCAGGGCCUugGGGGc -3' miRNA: 3'- gaGGU-----AGGuUAGUUCCGGGugUUCCa -5' |
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28927 | 5' | -52.8 | NC_006146.1 | + | 86295 | 0.68 | 0.929932 |
Target: 5'- cCUCUGUCCGG-CAuggcuggaguaggAGGCCCuggGCAGGGUc -3' miRNA: 3'- -GAGGUAGGUUaGU-------------UCCGGG---UGUUCCA- -5' |
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28927 | 5' | -52.8 | NC_006146.1 | + | 61513 | 0.68 | 0.930462 |
Target: 5'- -gCCGUCCGAUCAgggAGGCCUccggugucCGGGGg -3' miRNA: 3'- gaGGUAGGUUAGU---UCCGGGu-------GUUCCa -5' |
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28927 | 5' | -52.8 | NC_006146.1 | + | 100851 | 0.68 | 0.930462 |
Target: 5'- --gCA-CUGAUCAAGGCCCGCcggAAGGUc -3' miRNA: 3'- gagGUaGGUUAGUUCCGGGUG---UUCCA- -5' |
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28927 | 5' | -52.8 | NC_006146.1 | + | 62919 | 0.68 | 0.935116 |
Target: 5'- -aCCGUCUuugcccugucuguGGUCuccAGGGCCCugGAGGUc -3' miRNA: 3'- gaGGUAGG-------------UUAG---UUCCGGGugUUCCA- -5' |
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28927 | 5' | -52.8 | NC_006146.1 | + | 159056 | 0.68 | 0.93562 |
Target: 5'- -cCCAagcCCGAgaagCAGGGCCCggcGCAAGGg -3' miRNA: 3'- gaGGUa--GGUUa---GUUCCGGG---UGUUCCa -5' |
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28927 | 5' | -52.8 | NC_006146.1 | + | 99548 | 0.68 | 0.940529 |
Target: 5'- gUCCGagCCcccggggcagaGAUCGGGGUCCAgGAGGUa -3' miRNA: 3'- gAGGUa-GG-----------UUAGUUCCGGGUgUUCCA- -5' |
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28927 | 5' | -52.8 | NC_006146.1 | + | 131630 | 0.68 | 0.940529 |
Target: 5'- -gCCGUCuCGAgucCGGGGCCCACAcccguuccucAGGg -3' miRNA: 3'- gaGGUAG-GUUa--GUUCCGGGUGU----------UCCa -5' |
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28927 | 5' | -52.8 | NC_006146.1 | + | 116023 | 0.68 | 0.945189 |
Target: 5'- cCUCCggCCGGUUAAaggccuccacGGCCCGCugcuGGGg -3' miRNA: 3'- -GAGGuaGGUUAGUU----------CCGGGUGu---UCCa -5' |
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28927 | 5' | -52.8 | NC_006146.1 | + | 102585 | 0.67 | 0.949603 |
Target: 5'- -gCCAUCCucUCGcGGCCCGagGAGGg -3' miRNA: 3'- gaGGUAGGuuAGUuCCGGGUg-UUCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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