miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28927 5' -52.8 NC_006146.1 + 6705 1.07 0.007486
Target:  5'- cCUCCAUCCAAUCAAGGCCCACAAGGUc -3'
miRNA:   3'- -GAGGUAGGUUAGUUCCGGGUGUUCCA- -5'
28927 5' -52.8 NC_006146.1 + 125840 0.78 0.444863
Target:  5'- gUCCGaCCGGUCAucaagcccaAGGCCCGCGAGGc -3'
miRNA:   3'- gAGGUaGGUUAGU---------UCCGGGUGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 67382 0.77 0.532636
Target:  5'- aUCCAUCU-AUCGGGGCCUACAGGa- -3'
miRNA:   3'- gAGGUAGGuUAGUUCCGGGUGUUCca -5'
28927 5' -52.8 NC_006146.1 + 33927 0.73 0.739486
Target:  5'- cCUCCGUCCGGUgGGugcGGUCCGCuGGGUc -3'
miRNA:   3'- -GAGGUAGGUUAgUU---CCGGGUGuUCCA- -5'
28927 5' -52.8 NC_006146.1 + 129840 0.73 0.739486
Target:  5'- cCUCCcUCCAcccCGAGGCCCcCAGGGc -3'
miRNA:   3'- -GAGGuAGGUua-GUUCCGGGuGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 23444 0.72 0.768963
Target:  5'- gCUCCGgcugCCcGUCucGGCCUACGAGGc -3'
miRNA:   3'- -GAGGUa---GGuUAGuuCCGGGUGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 123594 0.72 0.787991
Target:  5'- -aUCAUCCAG--GAGGCCCGgGAGGa -3'
miRNA:   3'- gaGGUAGGUUagUUCCGGGUgUUCCa -5'
28927 5' -52.8 NC_006146.1 + 113722 0.72 0.787991
Target:  5'- uCUCCA-CCAG--GGGGCCCACuGGGGUg -3'
miRNA:   3'- -GAGGUaGGUUagUUCCGGGUG-UUCCA- -5'
28927 5' -52.8 NC_006146.1 + 155067 0.72 0.794515
Target:  5'- uCUCUAUCCAAUCGcucggcucgaugccGGGCCagauCAGGGa -3'
miRNA:   3'- -GAGGUAGGUUAGU--------------UCCGGgu--GUUCCa -5'
28927 5' -52.8 NC_006146.1 + 73589 0.72 0.797289
Target:  5'- uCUCC-UCCGGUCGA-GCUCACGGGGc -3'
miRNA:   3'- -GAGGuAGGUUAGUUcCGGGUGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 3900 0.71 0.80643
Target:  5'- -cCCA-CCGA-CGAGGCCCcCAAGGUc -3'
miRNA:   3'- gaGGUaGGUUaGUUCCGGGuGUUCCA- -5'
28927 5' -52.8 NC_006146.1 + 87143 0.71 0.815406
Target:  5'- cCUCCcaCCAGgccacccacugcUCAcGGCCCACAGGGg -3'
miRNA:   3'- -GAGGuaGGUU------------AGUuCCGGGUGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 56230 0.71 0.824207
Target:  5'- -gCCGUCCAGc--GGGUCCGCGGGGg -3'
miRNA:   3'- gaGGUAGGUUaguUCCGGGUGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 83516 0.71 0.841251
Target:  5'- uCUCCuggcgcaggguUCUGAUCAGGGCCCACAGc-- -3'
miRNA:   3'- -GAGGu----------AGGUUAGUUCCGGGUGUUcca -5'
28927 5' -52.8 NC_006146.1 + 53099 0.71 0.849477
Target:  5'- cCUCCGUCUAGUCcggaggcGGCCCGgccCGGGGg -3'
miRNA:   3'- -GAGGUAGGUUAGuu-----CCGGGU---GUUCCa -5'
28927 5' -52.8 NC_006146.1 + 54033 0.7 0.880247
Target:  5'- cCUCCGgagggcggCCAugucggcggugGUCAGGGCCCACcuGGc -3'
miRNA:   3'- -GAGGUa-------GGU-----------UAGUUCCGGGUGuuCCa -5'
28927 5' -52.8 NC_006146.1 + 502 0.7 0.887374
Target:  5'- cCUCCGcCCc--CGAGGCCCcCAGGGg -3'
miRNA:   3'- -GAGGUaGGuuaGUUCCGGGuGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 1433 0.7 0.887374
Target:  5'- cCUCCGcCCc--CGAGGCCCcCAGGGg -3'
miRNA:   3'- -GAGGUaGGuuaGUUCCGGGuGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 2365 0.7 0.887374
Target:  5'- cCUCCGcCCc--CGAGGCCCcCAGGGg -3'
miRNA:   3'- -GAGGUaGGuuaGUUCCGGGuGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 3297 0.7 0.887374
Target:  5'- cCUCCGcCCc--CGAGGCCCcCAGGGg -3'
miRNA:   3'- -GAGGUaGGuuaGUUCCGGGuGUUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.