miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28927 5' -52.8 NC_006146.1 + 502 0.7 0.887374
Target:  5'- cCUCCGcCCc--CGAGGCCCcCAGGGg -3'
miRNA:   3'- -GAGGUaGGuuaGUUCCGGGuGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 1433 0.7 0.887374
Target:  5'- cCUCCGcCCc--CGAGGCCCcCAGGGg -3'
miRNA:   3'- -GAGGUaGGuuaGUUCCGGGuGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 2365 0.7 0.887374
Target:  5'- cCUCCGcCCc--CGAGGCCCcCAGGGg -3'
miRNA:   3'- -GAGGUaGGuuaGUUCCGGGuGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 3297 0.7 0.887374
Target:  5'- cCUCCGcCCc--CGAGGCCCcCAGGGg -3'
miRNA:   3'- -GAGGUaGGuuaGUUCCGGGuGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 3900 0.71 0.80643
Target:  5'- -cCCA-CCGA-CGAGGCCCcCAAGGUc -3'
miRNA:   3'- gaGGUaGGUUaGUUCCGGGuGUUCCA- -5'
28927 5' -52.8 NC_006146.1 + 6705 1.07 0.007486
Target:  5'- cCUCCAUCCAAUCAAGGCCCACAAGGUc -3'
miRNA:   3'- -GAGGUAGGUUAGUUCCGGGUGUUCCA- -5'
28927 5' -52.8 NC_006146.1 + 8503 0.66 0.973946
Target:  5'- -aCCAUCCu-----GGCCCACcGGGg -3'
miRNA:   3'- gaGGUAGGuuaguuCCGGGUGuUCCa -5'
28927 5' -52.8 NC_006146.1 + 11001 0.67 0.96811
Target:  5'- -cCCAUCUucGAgggccccggccUCGAGGCCCucuGCGAGGa -3'
miRNA:   3'- gaGGUAGG--UU-----------AGUUCCGGG---UGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 13047 0.67 0.953774
Target:  5'- aUCC-UCCGAgacUCcGGGCCC-CAAGGc -3'
miRNA:   3'- gAGGuAGGUU---AGuUCCGGGuGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 13410 0.67 0.96811
Target:  5'- cCUCag-CCAGgucugCAAGGCCCGCccGGUc -3'
miRNA:   3'- -GAGguaGGUUa----GUUCCGGGUGuuCCA- -5'
28927 5' -52.8 NC_006146.1 + 15287 0.67 0.957705
Target:  5'- aCUUCA-CCuc-CAGGGCCCACAucauGGGa -3'
miRNA:   3'- -GAGGUaGGuuaGUUCCGGGUGU----UCCa -5'
28927 5' -52.8 NC_006146.1 + 16125 0.67 0.953774
Target:  5'- aUCC-UCCGAgacUCcGGGCCC-CAAGGc -3'
miRNA:   3'- gAGGuAGGUU---AGuUCCGGGuGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 18365 0.67 0.957705
Target:  5'- aCUUCA-CCuc-CAGGGCCCACAucauGGGa -3'
miRNA:   3'- -GAGGUaGGuuaGUUCCGGGUGU----UCCa -5'
28927 5' -52.8 NC_006146.1 + 19203 0.67 0.953774
Target:  5'- aUCC-UCCGAgacUCcGGGCCC-CAAGGc -3'
miRNA:   3'- gAGGuAGGUU---AGuUCCGGGuGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 21443 0.67 0.957705
Target:  5'- aCUUCA-CCuc-CAGGGCCCACAucauGGGa -3'
miRNA:   3'- -GAGGUaGGuuaGUUCCGGGUGU----UCCa -5'
28927 5' -52.8 NC_006146.1 + 22281 0.67 0.953774
Target:  5'- aUCC-UCCGAgacUCcGGGCCC-CAAGGc -3'
miRNA:   3'- gAGGuAGGUU---AGuUCCGGGuGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 23444 0.72 0.768963
Target:  5'- gCUCCGgcugCCcGUCucGGCCUACGAGGc -3'
miRNA:   3'- -GAGGUa---GGuUAGuuCCGGGUGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 24521 0.67 0.957705
Target:  5'- aCUUCA-CCuc-CAGGGCCCACAucauGGGa -3'
miRNA:   3'- -GAGGUaGGuuaGUUCCGGGUGU----UCCa -5'
28927 5' -52.8 NC_006146.1 + 25359 0.67 0.953774
Target:  5'- aUCC-UCCGAgacUCcGGGCCC-CAAGGc -3'
miRNA:   3'- gAGGuAGGUU---AGuUCCGGGuGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 27599 0.67 0.957705
Target:  5'- aCUUCA-CCuc-CAGGGCCCACAucauGGGa -3'
miRNA:   3'- -GAGGUaGGuuaGUUCCGGGUGU----UCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.