miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28927 5' -52.8 NC_006146.1 + 170343 0.66 0.981187
Target:  5'- uCUCCugggaggCCAcguGUgGAGGCCCGCGgagAGGc -3'
miRNA:   3'- -GAGGua-----GGU---UAgUUCCGGGUGU---UCCa -5'
28927 5' -52.8 NC_006146.1 + 169412 0.66 0.981187
Target:  5'- uCUCCugggaggCCAcguGUgGAGGCCCGCGgagAGGc -3'
miRNA:   3'- -GAGGua-----GGU---UAgUUCCGGGUGU---UCCa -5'
28927 5' -52.8 NC_006146.1 + 168480 0.66 0.981187
Target:  5'- uCUCCugggaggCCAcguGUgGAGGCCCGCGgagAGGc -3'
miRNA:   3'- -GAGGua-----GGU---UAgUUCCGGGUGU---UCCa -5'
28927 5' -52.8 NC_006146.1 + 168141 0.69 0.900916
Target:  5'- --aCAUCCGGgcuuGGGCCUGCGAGGg -3'
miRNA:   3'- gagGUAGGUUagu-UCCGGGUGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 167548 0.66 0.981187
Target:  5'- uCUCCugggaggCCAcguGUgGAGGCCCGCGgagAGGc -3'
miRNA:   3'- -GAGGua-----GGU---UAgUUCCGGGUGU---UCCa -5'
28927 5' -52.8 NC_006146.1 + 165662 0.67 0.96811
Target:  5'- gUCCGUgaccCCAcagcccCGAGGCCgGCAAGGa -3'
miRNA:   3'- gAGGUA----GGUua----GUUCCGGgUGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 159056 0.68 0.93562
Target:  5'- -cCCAagcCCGAgaagCAGGGCCCggcGCAAGGg -3'
miRNA:   3'- gaGGUa--GGUUa---GUUCCGGG---UGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 157515 0.67 0.952959
Target:  5'- cCUCCGUCCucuggacuaGGGGCCCugggcccCGAGGg -3'
miRNA:   3'- -GAGGUAGGuuag-----UUCCGGGu------GUUCCa -5'
28927 5' -52.8 NC_006146.1 + 155610 0.69 0.900916
Target:  5'- cCUCCca-UGAUguGGGCCCugGAGGUg -3'
miRNA:   3'- -GAGGuagGUUAguUCCGGGugUUCCA- -5'
28927 5' -52.8 NC_006146.1 + 155067 0.72 0.794515
Target:  5'- uCUCUAUCCAAUCGcucggcucgaugccGGGCCagauCAGGGa -3'
miRNA:   3'- -GAGGUAGGUUAGU--------------UCCGGgu--GUUCCa -5'
28927 5' -52.8 NC_006146.1 + 154437 0.67 0.952959
Target:  5'- cCUCCGUCCucuggacuaGGGGCCCugggcccCGAGGg -3'
miRNA:   3'- -GAGGUAGGuuag-----UUCCGGGu------GUUCCa -5'
28927 5' -52.8 NC_006146.1 + 152532 0.69 0.900916
Target:  5'- cCUCCca-UGAUguGGGCCCugGAGGUg -3'
miRNA:   3'- -GAGGuagGUUAguUCCGGGugUUCCA- -5'
28927 5' -52.8 NC_006146.1 + 151359 0.67 0.952959
Target:  5'- cCUCCGUCCucuggacuaGGGGCCCugggcccCGAGGg -3'
miRNA:   3'- -GAGGUAGGuuag-----UUCCGGGu------GUUCCa -5'
28927 5' -52.8 NC_006146.1 + 149454 0.69 0.900916
Target:  5'- cCUCCca-UGAUguGGGCCCugGAGGUg -3'
miRNA:   3'- -GAGGuagGUUAguUCCGGGugUUCCA- -5'
28927 5' -52.8 NC_006146.1 + 148281 0.67 0.952959
Target:  5'- cCUCCGUCCucuggacuaGGGGCCCugggcccCGAGGg -3'
miRNA:   3'- -GAGGUAGGuuag-----UUCCGGGu------GUUCCa -5'
28927 5' -52.8 NC_006146.1 + 148146 0.66 0.973946
Target:  5'- gCUUCGUgCUggUCAGGGCCC---GGGUc -3'
miRNA:   3'- -GAGGUA-GGuuAGUUCCGGGuguUCCA- -5'
28927 5' -52.8 NC_006146.1 + 146376 0.69 0.900916
Target:  5'- cCUCCca-UGAUguGGGCCCugGAGGUg -3'
miRNA:   3'- -GAGGuagGUUAguUCCGGGugUUCCA- -5'
28927 5' -52.8 NC_006146.1 + 145203 0.67 0.952959
Target:  5'- cCUCCGUCCucuggacuaGGGGCCCugggcccCGAGGg -3'
miRNA:   3'- -GAGGUAGGuuag-----UUCCGGGu------GUUCCa -5'
28927 5' -52.8 NC_006146.1 + 143298 0.69 0.900916
Target:  5'- cCUCCca-UGAUguGGGCCCugGAGGUg -3'
miRNA:   3'- -GAGGuagGUUAguUCCGGGugUUCCA- -5'
28927 5' -52.8 NC_006146.1 + 142125 0.67 0.952959
Target:  5'- cCUCCGUCCucuggacuaGGGGCCCugggcccCGAGGg -3'
miRNA:   3'- -GAGGUAGGuuag-----UUCCGGGu------GUUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.