miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28927 5' -52.8 NC_006146.1 + 125840 0.78 0.444863
Target:  5'- gUCCGaCCGGUCAucaagcccaAGGCCCGCGAGGc -3'
miRNA:   3'- gAGGUaGGUUAGU---------UCCGGGUGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 13047 0.67 0.953774
Target:  5'- aUCC-UCCGAgacUCcGGGCCC-CAAGGc -3'
miRNA:   3'- gAGGuAGGUU---AGuUCCGGGuGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 19203 0.67 0.953774
Target:  5'- aUCC-UCCGAgacUCcGGGCCC-CAAGGc -3'
miRNA:   3'- gAGGuAGGUU---AGuUCCGGGuGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 33740 0.66 0.981187
Target:  5'- cCUCCgGUCCGGUgGguguGGUCCGCuGGGUc -3'
miRNA:   3'- -GAGG-UAGGUUAgUu---CCGGGUGuUCCA- -5'
28927 5' -52.8 NC_006146.1 + 3900 0.71 0.80643
Target:  5'- -cCCA-CCGA-CGAGGCCCcCAAGGUc -3'
miRNA:   3'- gaGGUaGGUUaGUUCCGGGuGUUCCA- -5'
28927 5' -52.8 NC_006146.1 + 87143 0.71 0.815406
Target:  5'- cCUCCcaCCAGgccacccacugcUCAcGGCCCACAGGGg -3'
miRNA:   3'- -GAGGuaGGUU------------AGUuCCGGGUGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 53099 0.71 0.849477
Target:  5'- cCUCCGUCUAGUCcggaggcGGCCCGgccCGGGGg -3'
miRNA:   3'- -GAGGUAGGUUAGuu-----CCGGGU---GUUCCa -5'
28927 5' -52.8 NC_006146.1 + 54033 0.7 0.880247
Target:  5'- cCUCCGgagggcggCCAugucggcggugGUCAGGGCCCACcuGGc -3'
miRNA:   3'- -GAGGUa-------GGU-----------UAGUUCCGGGUGuuCCa -5'
28927 5' -52.8 NC_006146.1 + 86295 0.68 0.929932
Target:  5'- cCUCUGUCCGG-CAuggcuggaguaggAGGCCCuggGCAGGGUc -3'
miRNA:   3'- -GAGGUAGGUUaGU-------------UCCGGG---UGUUCCA- -5'
28927 5' -52.8 NC_006146.1 + 116023 0.68 0.945189
Target:  5'- cCUCCggCCGGUUAAaggccuccacGGCCCGCugcuGGGg -3'
miRNA:   3'- -GAGGuaGGUUAGUU----------CCGGGUGu---UCCa -5'
28927 5' -52.8 NC_006146.1 + 62919 0.68 0.935116
Target:  5'- -aCCGUCUuugcccugucuguGGUCuccAGGGCCCugGAGGUc -3'
miRNA:   3'- gaGGUAGG-------------UUAG---UUCCGGGugUUCCA- -5'
28927 5' -52.8 NC_006146.1 + 46619 0.68 0.925052
Target:  5'- -gCCAggucuUCC-AUCAGGGCCUugGGGGc -3'
miRNA:   3'- gaGGU-----AGGuUAGUUCCGGGugUUCCa -5'
28927 5' -52.8 NC_006146.1 + 129840 0.73 0.739486
Target:  5'- cCUCCcUCCAcccCGAGGCCCcCAGGGc -3'
miRNA:   3'- -GAGGuAGGUua-GUUCCGGGuGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 159056 0.68 0.93562
Target:  5'- -cCCAagcCCGAgaagCAGGGCCCggcGCAAGGg -3'
miRNA:   3'- gaGGUa--GGUUa---GUUCCGGG---UGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 33927 0.73 0.739486
Target:  5'- cCUCCGUCCGGUgGGugcGGUCCGCuGGGUc -3'
miRNA:   3'- -GAGGUAGGUUAgUU---CCGGGUGuUCCA- -5'
28927 5' -52.8 NC_006146.1 + 103968 0.69 0.894265
Target:  5'- aCUCUcgCCGcaggaaGUC-AGGCCCACAuccAGGUu -3'
miRNA:   3'- -GAGGuaGGU------UAGuUCCGGGUGU---UCCA- -5'
28927 5' -52.8 NC_006146.1 + 99548 0.68 0.940529
Target:  5'- gUCCGagCCcccggggcagaGAUCGGGGUCCAgGAGGUa -3'
miRNA:   3'- gAGGUa-GG-----------UUAGUUCCGGGUgUUCCA- -5'
28927 5' -52.8 NC_006146.1 + 16125 0.67 0.953774
Target:  5'- aUCC-UCCGAgacUCcGGGCCC-CAAGGc -3'
miRNA:   3'- gAGGuAGGUU---AGuUCCGGGuGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 155067 0.72 0.794515
Target:  5'- uCUCUAUCCAAUCGcucggcucgaugccGGGCCagauCAGGGa -3'
miRNA:   3'- -GAGGUAGGUUAGU--------------UCCGGgu--GUUCCa -5'
28927 5' -52.8 NC_006146.1 + 56230 0.71 0.824207
Target:  5'- -gCCGUCCAGc--GGGUCCGCGGGGg -3'
miRNA:   3'- gaGGUAGGUUaguUCCGGGUGUUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.