miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28927 5' -52.8 NC_006146.1 + 168141 0.69 0.900916
Target:  5'- --aCAUCCGGgcuuGGGCCUGCGAGGg -3'
miRNA:   3'- gagGUAGGUUagu-UCCGGGUGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 145203 0.67 0.952959
Target:  5'- cCUCCGUCCucuggacuaGGGGCCCugggcccCGAGGg -3'
miRNA:   3'- -GAGGUAGGuuag-----UUCCGGGu------GUUCCa -5'
28927 5' -52.8 NC_006146.1 + 142125 0.67 0.952959
Target:  5'- cCUCCGUCCucuggacuaGGGGCCCugggcccCGAGGg -3'
miRNA:   3'- -GAGGUAGGuuag-----UUCCGGGu------GUUCCa -5'
28927 5' -52.8 NC_006146.1 + 102585 0.67 0.949603
Target:  5'- -gCCAUCCucUCGcGGCCCGagGAGGg -3'
miRNA:   3'- gaGGUAGGuuAGUuCCGGGUg-UUCCa -5'
28927 5' -52.8 NC_006146.1 + 118013 0.67 0.949603
Target:  5'- -aCCAUgCGGggcUCGGGGCgCGCGAGGa -3'
miRNA:   3'- gaGGUAgGUU---AGUUCCGgGUGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 131630 0.68 0.940529
Target:  5'- -gCCGUCuCGAgucCGGGGCCCACAcccguuccucAGGg -3'
miRNA:   3'- gaGGUAG-GUUa--GUUCCGGGUGU----------UCCa -5'
28927 5' -52.8 NC_006146.1 + 61513 0.68 0.930462
Target:  5'- -gCCGUCCGAUCAgggAGGCCUccggugucCGGGGg -3'
miRNA:   3'- gaGGUAGGUUAGU---UCCGGGu-------GUUCCa -5'
28927 5' -52.8 NC_006146.1 + 85427 0.69 0.919392
Target:  5'- -aCCAgCCAggccGUgAAGGCCCugAGGGa -3'
miRNA:   3'- gaGGUaGGU----UAgUUCCGGGugUUCCa -5'
28927 5' -52.8 NC_006146.1 + 125681 0.69 0.907322
Target:  5'- cCUCCGUCCGGUUccAGaGUCCGgGAGGg -3'
miRNA:   3'- -GAGGUAGGUUAGu-UC-CGGGUgUUCCa -5'
28927 5' -52.8 NC_006146.1 + 148281 0.67 0.952959
Target:  5'- cCUCCGUCCucuggacuaGGGGCCCugggcccCGAGGg -3'
miRNA:   3'- -GAGGUAGGuuag-----UUCCGGGu------GUUCCa -5'
28927 5' -52.8 NC_006146.1 + 151359 0.67 0.952959
Target:  5'- cCUCCGUCCucuggacuaGGGGCCCugggcccCGAGGg -3'
miRNA:   3'- -GAGGUAGGuuag-----UUCCGGGu------GUUCCa -5'
28927 5' -52.8 NC_006146.1 + 154437 0.67 0.952959
Target:  5'- cCUCCGUCCucuggacuaGGGGCCCugggcccCGAGGg -3'
miRNA:   3'- -GAGGUAGGuuag-----UUCCGGGu------GUUCCa -5'
28927 5' -52.8 NC_006146.1 + 112680 0.66 0.973674
Target:  5'- cCUCCAUgucggucUCGAUCucgggucuGGCCCGCAgcAGGg -3'
miRNA:   3'- -GAGGUA-------GGUUAGuu------CCGGGUGU--UCCa -5'
28927 5' -52.8 NC_006146.1 + 41046 0.67 0.96811
Target:  5'- -cCCGUCCg--CGGcGGCCCugGGGGc -3'
miRNA:   3'- gaGGUAGGuuaGUU-CCGGGugUUCCa -5'
28927 5' -52.8 NC_006146.1 + 165662 0.67 0.96811
Target:  5'- gUCCGUgaccCCAcagcccCGAGGCCgGCAAGGa -3'
miRNA:   3'- gAGGUA----GGUua----GUUCCGGgUGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 11001 0.67 0.96811
Target:  5'- -cCCAUCUucGAgggccccggccUCGAGGCCCucuGCGAGGa -3'
miRNA:   3'- gaGGUAGG--UU-----------AGUUCCGGG---UGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 84982 0.67 0.96811
Target:  5'- -gCCAUCC-----AGGCCC-CAGGGUa -3'
miRNA:   3'- gaGGUAGGuuaguUCCGGGuGUUCCA- -5'
28927 5' -52.8 NC_006146.1 + 13410 0.67 0.96811
Target:  5'- cCUCag-CCAGgucugCAAGGCCCGCccGGUc -3'
miRNA:   3'- -GAGguaGGUUa----GUUCCGGGUGuuCCA- -5'
28927 5' -52.8 NC_006146.1 + 104624 0.67 0.953774
Target:  5'- -aCUAUCUGAUCAggAGGaCCCGCGAGa- -3'
miRNA:   3'- gaGGUAGGUUAGU--UCC-GGGUGUUCca -5'
28927 5' -52.8 NC_006146.1 + 157515 0.67 0.952959
Target:  5'- cCUCCGUCCucuggacuaGGGGCCCugggcccCGAGGg -3'
miRNA:   3'- -GAGGUAGGuuag-----UUCCGGGu------GUUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.