miRNA display CGI


Results 41 - 60 of 472 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28928 3' -54 NC_006146.1 + 109138 0.66 0.968407
Target:  5'- uUGGGCacaGAGGCCUCGGCcGCuGCc -3'
miRNA:   3'- uGCCCGgugUUUUGGGGCUGuUGuCG- -5'
28928 3' -54 NC_006146.1 + 87380 0.66 0.968407
Target:  5'- gUGGGCCcugauCAGAACCCUG-CGcCAGg -3'
miRNA:   3'- uGCCCGGu----GUUUUGGGGCuGUuGUCg -5'
28928 3' -54 NC_006146.1 + 9661 0.66 0.968407
Target:  5'- gACGGGCCcuuAUAcuGCCCCccACAuauguCAGCu -3'
miRNA:   3'- -UGCCCGG---UGUuuUGGGGc-UGUu----GUCG- -5'
28928 3' -54 NC_006146.1 + 115298 0.66 0.968407
Target:  5'- gGCGGGaguggUCAUAGAuaaGCCCCu-CGGCGGCc -3'
miRNA:   3'- -UGCCC-----GGUGUUU---UGGGGcuGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 44279 0.66 0.968407
Target:  5'- -aGGGCUGCAGAGCUaCC-ACAAC-GCa -3'
miRNA:   3'- ugCCCGGUGUUUUGG-GGcUGUUGuCG- -5'
28928 3' -54 NC_006146.1 + 152031 0.66 0.967482
Target:  5'- -gGGGCU--GAGGCCCCcGCAcguccaccaccccgGCAGCg -3'
miRNA:   3'- ugCCCGGugUUUUGGGGcUGU--------------UGUCG- -5'
28928 3' -54 NC_006146.1 + 101597 0.66 0.967482
Target:  5'- gACGaGGCCcagaACGAggUCCUcgucuuuacgcgguGGCAACGGCc -3'
miRNA:   3'- -UGC-CCGG----UGUUuuGGGG--------------CUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 58081 0.66 0.965574
Target:  5'- cCGGGaCAUu-GGCCCCGGCcgguaaaguuaagauGCAGCa -3'
miRNA:   3'- uGCCCgGUGuuUUGGGGCUGu--------------UGUCG- -5'
28928 3' -54 NC_006146.1 + 141666 0.66 0.965248
Target:  5'- cCGGGCCGcCGGggUCCCucCGGcCGGCc -3'
miRNA:   3'- uGCCCGGU-GUUuuGGGGcuGUU-GUCG- -5'
28928 3' -54 NC_006146.1 + 8604 0.66 0.965248
Target:  5'- aGCGGGUCAgAAAGaCUCGACGGCcccugGGUg -3'
miRNA:   3'- -UGCCCGGUgUUUUgGGGCUGUUG-----UCG- -5'
28928 3' -54 NC_006146.1 + 123373 0.66 0.965248
Target:  5'- cGCuGGCCG-GGGGCCCCG-CAACcuGGCu -3'
miRNA:   3'- -UGcCCGGUgUUUUGGGGCuGUUG--UCG- -5'
28928 3' -54 NC_006146.1 + 24690 0.66 0.965248
Target:  5'- cAUGGccGCCGCuu-ACCCCGGaggagcccauGCAGCa -3'
miRNA:   3'- -UGCC--CGGUGuuuUGGGGCUgu--------UGUCG- -5'
28928 3' -54 NC_006146.1 + 129315 0.66 0.965248
Target:  5'- cCGGGCCuCuccGCCUCGGCcagccaguaGGCGGCc -3'
miRNA:   3'- uGCCCGGuGuuuUGGGGCUG---------UUGUCG- -5'
28928 3' -54 NC_006146.1 + 82551 0.66 0.965248
Target:  5'- uAUGGGCCuccuuuAACCCCcugggccCAACGGCc -3'
miRNA:   3'- -UGCCCGGuguu--UUGGGGcu-----GUUGUCG- -5'
28928 3' -54 NC_006146.1 + 128972 0.66 0.965248
Target:  5'- cACGGGCCuCGGGuucuGCCUCaGCAagggggggucGCAGCu -3'
miRNA:   3'- -UGCCCGGuGUUU----UGGGGcUGU----------UGUCG- -5'
28928 3' -54 NC_006146.1 + 147821 0.66 0.965248
Target:  5'- cCGGGCCGcCGGggUCCCucCGGcCGGCc -3'
miRNA:   3'- uGCCCGGU-GUUuuGGGGcuGUU-GUCG- -5'
28928 3' -54 NC_006146.1 + 150899 0.66 0.965248
Target:  5'- cCGGGCCGcCGGggUCCCucCGGcCGGCc -3'
miRNA:   3'- uGCCCGGU-GUUuuGGGGcuGUU-GUCG- -5'
28928 3' -54 NC_006146.1 + 153977 0.66 0.965248
Target:  5'- cCGGGCCGcCGGggUCCCucCGGcCGGCc -3'
miRNA:   3'- uGCCCGGU-GUUuuGGGGcuGUU-GUCG- -5'
28928 3' -54 NC_006146.1 + 157055 0.66 0.965248
Target:  5'- cCGGGCCGcCGGggUCCCucCGGcCGGCc -3'
miRNA:   3'- uGCCCGGU-GUUuuGGGGcuGUU-GUCG- -5'
28928 3' -54 NC_006146.1 + 131050 0.66 0.965248
Target:  5'- cCGGGCaCACAGc-CCCCGcCGgcccacuguGCGGCc -3'
miRNA:   3'- uGCCCG-GUGUUuuGGGGCuGU---------UGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.