miRNA display CGI


Results 21 - 40 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28928 3' -54 NC_006146.1 + 78619 0.73 0.696844
Target:  5'- cCGGGCC-CGcc-CCCCaGCAGCAGCc -3'
miRNA:   3'- uGCCCGGuGUuuuGGGGcUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 45414 0.73 0.696844
Target:  5'- gUGGGCCagcGCGAGGCCCCGGC--CGGg -3'
miRNA:   3'- uGCCCGG---UGUUUUGGGGCUGuuGUCg -5'
28928 3' -54 NC_006146.1 + 48035 0.76 0.533688
Target:  5'- gGCGGGCCGgcucgggucgucCAGcGCCCCGG--GCAGCg -3'
miRNA:   3'- -UGCCCGGU------------GUUuUGGGGCUguUGUCG- -5'
28928 3' -54 NC_006146.1 + 69817 0.78 0.420379
Target:  5'- gAUGGGCCGCGAAgugcuGCCCCacaGCAugAGCc -3'
miRNA:   3'- -UGCCCGGUGUUU-----UGGGGc--UGUugUCG- -5'
28928 3' -54 NC_006146.1 + 13718 0.72 0.714963
Target:  5'- uCGGGuCCACcaggccggccggaGGGACCCCGGCAGCccgggagAGCc -3'
miRNA:   3'- uGCCC-GGUG-------------UUUUGGGGCUGUUG-------UCG- -5'
28928 3' -54 NC_006146.1 + 78769 0.73 0.696844
Target:  5'- cCGGGCC-CGcc-CCCCaGCAGCAGCc -3'
miRNA:   3'- uGCCCGGuGUuuuGGGGcUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 161836 0.73 0.666278
Target:  5'- uUGGGCCAC---GCCCCGugGGagacCGGCu -3'
miRNA:   3'- uGCCCGGUGuuuUGGGGCugUU----GUCG- -5'
28928 3' -54 NC_006146.1 + 159278 0.79 0.369424
Target:  5'- cGCGGGCCuCGGGGCCCUcGCAGuCGGCa -3'
miRNA:   3'- -UGCCCGGuGUUUUGGGGcUGUU-GUCG- -5'
28928 3' -54 NC_006146.1 + 78739 0.73 0.696844
Target:  5'- cCGGGCC-CGcc-CCCCaGCAGCAGCc -3'
miRNA:   3'- uGCCCGGuGUuuuGGGGcUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 78829 0.8 0.345581
Target:  5'- cCGGGCCGCc---CCCCG-CAGCAGCc -3'
miRNA:   3'- uGCCCGGUGuuuuGGGGCuGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 156568 0.73 0.676506
Target:  5'- -aGGGCCGCAAcGGCCCUG-CGugAGUu -3'
miRNA:   3'- ugCCCGGUGUU-UUGGGGCuGUugUCG- -5'
28928 3' -54 NC_006146.1 + 78649 0.73 0.696844
Target:  5'- cCGGGCC-CGcc-CCCCaGCAGCAGCc -3'
miRNA:   3'- uGCCCGGuGUuuuGGGGcUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 47633 0.74 0.62517
Target:  5'- -aGGGCCACGAGccguCUCUGGCcGCGGCc -3'
miRNA:   3'- ugCCCGGUGUUUu---GGGGCUGuUGUCG- -5'
28928 3' -54 NC_006146.1 + 98944 0.76 0.533688
Target:  5'- uCGGcGCCACGAAGCCCagGACAAacucguCGGCa -3'
miRNA:   3'- uGCC-CGGUGUUUUGGGg-CUGUU------GUCG- -5'
28928 3' -54 NC_006146.1 + 124090 0.77 0.49447
Target:  5'- -aGGGCCACGuAAGCCa-GAUGACAGCg -3'
miRNA:   3'- ugCCCGGUGU-UUUGGggCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 68841 0.78 0.432866
Target:  5'- aGCGGGCU-CAAGGCCCUgcuggcaagcaggcuGGCGACAGCc -3'
miRNA:   3'- -UGCCCGGuGUUUUGGGG---------------CUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 29107 0.72 0.714963
Target:  5'- uCGGGuCCACcaggccggccggaGGGACCCCGGCAGCccgggagAGCc -3'
miRNA:   3'- uGCCC-GGUG-------------UUUUGGGGCUGUUG-------UCG- -5'
28928 3' -54 NC_006146.1 + 16796 0.72 0.714963
Target:  5'- uCGGGuCCACcaggccggccggaGGGACCCCGGCAGCccgggagAGCc -3'
miRNA:   3'- uGCCC-GGUG-------------UUUUGGGGCUGUUG-------UCG- -5'
28928 3' -54 NC_006146.1 + 147152 0.73 0.696844
Target:  5'- --cGGCCGCGGcaguugaCCCGGCGGCGGCg -3'
miRNA:   3'- ugcCCGGUGUUuug----GGGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 78799 0.73 0.696844
Target:  5'- cCGGGCC-CGcc-CCCCaGCAGCAGCc -3'
miRNA:   3'- uGCCCGGuGUuuuGGGGcUGUUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.