miRNA display CGI


Results 1 - 20 of 472 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28928 3' -54 NC_006146.1 + 34144 0.85 0.180654
Target:  5'- cCGGGCCuccCGGAGCCCCGGCGAgGGUg -3'
miRNA:   3'- uGCCCGGu--GUUUUGGGGCUGUUgUCG- -5'
28928 3' -54 NC_006146.1 + 161836 0.73 0.666278
Target:  5'- uUGGGCCAC---GCCCCGugGGagacCGGCu -3'
miRNA:   3'- uGCCCGGUGuuuUGGGGCugUU----GUCG- -5'
28928 3' -54 NC_006146.1 + 45414 0.73 0.696844
Target:  5'- gUGGGCCagcGCGAGGCCCCGGC--CGGg -3'
miRNA:   3'- uGCCCGG---UGUUUUGGGGCUGuuGUCg -5'
28928 3' -54 NC_006146.1 + 127740 0.66 0.972478
Target:  5'- cUGGGCCGgAGAGCCuggagaagauuaucgCCGACcuCAGg -3'
miRNA:   3'- uGCCCGGUgUUUUGG---------------GGCUGuuGUCg -5'
28928 3' -54 NC_006146.1 + 68841 0.78 0.432866
Target:  5'- aGCGGGCU-CAAGGCCCUgcuggcaagcaggcuGGCGACAGCc -3'
miRNA:   3'- -UGCCCGGuGUUUUGGGG---------------CUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 137885 0.78 0.438284
Target:  5'- cCGGGCCgGCAGGggguCCCCGugGACAGg -3'
miRNA:   3'- uGCCCGG-UGUUUu---GGGGCugUUGUCg -5'
28928 3' -54 NC_006146.1 + 124090 0.77 0.49447
Target:  5'- -aGGGCCACGuAAGCCa-GAUGACAGCg -3'
miRNA:   3'- ugCCCGGUGU-UUUGGggCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 128260 0.76 0.513926
Target:  5'- cUGGGcCCACuacguGAGGCCCaCGGCGGCGGCc -3'
miRNA:   3'- uGCCC-GGUG-----UUUUGGG-GCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 98944 0.76 0.533688
Target:  5'- uCGGcGCCACGAAGCCCagGACAAacucguCGGCa -3'
miRNA:   3'- uGCC-CGGUGUUUUGGGg-CUGUU------GUCG- -5'
28928 3' -54 NC_006146.1 + 146863 0.74 0.645746
Target:  5'- -gGGGCCGCGucACCCCGcCAGgGGg -3'
miRNA:   3'- ugCCCGGUGUuuUGGGGCuGUUgUCg -5'
28928 3' -54 NC_006146.1 + 68323 0.75 0.594365
Target:  5'- uCGGGCCGCGAGaggaugGCgUCGAgGACGGCc -3'
miRNA:   3'- uGCCCGGUGUUU------UGgGGCUgUUGUCG- -5'
28928 3' -54 NC_006146.1 + 48035 0.76 0.533688
Target:  5'- gGCGGGCCGgcucgggucgucCAGcGCCCCGG--GCAGCg -3'
miRNA:   3'- -UGCCCGGU------------GUUuUGGGGCUguUGUCG- -5'
28928 3' -54 NC_006146.1 + 78829 0.8 0.345581
Target:  5'- cCGGGCCGCc---CCCCG-CAGCAGCc -3'
miRNA:   3'- uGCCCGGUGuuuuGGGGCuGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 47633 0.74 0.62517
Target:  5'- -aGGGCCACGAGccguCUCUGGCcGCGGCc -3'
miRNA:   3'- ugCCCGGUGUUUu---GGGGCUGuUGUCG- -5'
28928 3' -54 NC_006146.1 + 159278 0.79 0.369424
Target:  5'- cGCGGGCCuCGGGGCCCUcGCAGuCGGCa -3'
miRNA:   3'- -UGCCCGGuGUUUUGGGGcUGUU-GUCG- -5'
28928 3' -54 NC_006146.1 + 153218 0.76 0.523772
Target:  5'- cACGGGCCGCccguAGAugCCgGACAugACGGUg -3'
miRNA:   3'- -UGCCCGGUG----UUUugGGgCUGU--UGUCG- -5'
28928 3' -54 NC_006146.1 + 58555 0.74 0.645746
Target:  5'- gGCGGcCUACAugGAGCCCUGGC-ACAGCc -3'
miRNA:   3'- -UGCCcGGUGU--UUUGGGGCUGuUGUCG- -5'
28928 3' -54 NC_006146.1 + 156568 0.73 0.676506
Target:  5'- -aGGGCCGCAAcGGCCCUG-CGugAGUu -3'
miRNA:   3'- ugCCCGGUGUU-UUGGGGCuGUugUCG- -5'
28928 3' -54 NC_006146.1 + 69817 0.78 0.420379
Target:  5'- gAUGGGCCGCGAAgugcuGCCCCacaGCAugAGCc -3'
miRNA:   3'- -UGCCCGGUGUUU-----UGGGGc--UGUugUCG- -5'
28928 3' -54 NC_006146.1 + 76781 0.77 0.456618
Target:  5'- aACGGGCCAgAAcGCCCCcAC-ACGGCu -3'
miRNA:   3'- -UGCCCGGUgUUuUGGGGcUGuUGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.