miRNA display CGI


Results 1 - 20 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28928 3' -54 NC_006146.1 + 442 0.68 0.901322
Target:  5'- uCGGGUCGCGGGAcacgcccccgggucCCCCGGCAcgcGCcgGGCc -3'
miRNA:   3'- uGCCCGGUGUUUU--------------GGGGCUGU---UG--UCG- -5'
28928 3' -54 NC_006146.1 + 585 0.69 0.89679
Target:  5'- -gGGGCCGgGGGcgcGgCCCGGCGcCAGCc -3'
miRNA:   3'- ugCCCGGUgUUU---UgGGGCUGUuGUCG- -5'
28928 3' -54 NC_006146.1 + 855 0.69 0.890118
Target:  5'- cCGGGCC-Cu---CCCCGACAucCAGg -3'
miRNA:   3'- uGCCCGGuGuuuuGGGGCUGUu-GUCg -5'
28928 3' -54 NC_006146.1 + 929 0.66 0.969611
Target:  5'- cCGGGCgCGCGccggccucccgucccGAagGCCCUGGCA-CAGUg -3'
miRNA:   3'- uGCCCG-GUGU---------------UU--UGGGGCUGUuGUCG- -5'
28928 3' -54 NC_006146.1 + 1233 0.72 0.746568
Target:  5'- gGCGGGCCACGc-GCgCCCGcCAcgccCAGCu -3'
miRNA:   3'- -UGCCCGGUGUuuUG-GGGCuGUu---GUCG- -5'
28928 3' -54 NC_006146.1 + 1373 0.68 0.901322
Target:  5'- uCGGGUCGCGGGAcacgcccccgggucCCCCGGCAcgcGCcgGGCc -3'
miRNA:   3'- uGCCCGGUGUUUU--------------GGGGCUGU---UG--UCG- -5'
28928 3' -54 NC_006146.1 + 1516 0.69 0.89679
Target:  5'- -gGGGCCGgGGGcgcGgCCCGGCGcCAGCc -3'
miRNA:   3'- ugCCCGGUgUUU---UgGGGCUGUuGUCG- -5'
28928 3' -54 NC_006146.1 + 1787 0.69 0.890118
Target:  5'- cCGGGCC-Cu---CCCCGACAucCAGg -3'
miRNA:   3'- uGCCCGGuGuuuuGGGGCUGUu-GUCg -5'
28928 3' -54 NC_006146.1 + 1861 0.66 0.969611
Target:  5'- cCGGGCgCGCGccggccucccgucccGAagGCCCUGGCA-CAGUg -3'
miRNA:   3'- uGCCCG-GUGU---------------UU--UGGGGCUGUuGUCG- -5'
28928 3' -54 NC_006146.1 + 2021 0.68 0.903229
Target:  5'- -gGGGCgGCAAcgauGACCCUaGGCcuCAGCg -3'
miRNA:   3'- ugCCCGgUGUU----UUGGGG-CUGuuGUCG- -5'
28928 3' -54 NC_006146.1 + 2059 0.67 0.933873
Target:  5'- -aGGGCC-CGAGaguugGCCCuCGucggcauucuauuggGCAACAGCg -3'
miRNA:   3'- ugCCCGGuGUUU-----UGGG-GC---------------UGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 2165 0.72 0.746568
Target:  5'- gGCGGGCCACGc-GCgCCCGcCAcgccCAGCu -3'
miRNA:   3'- -UGCCCGGUGUuuUG-GGGCuGUu---GUCG- -5'
28928 3' -54 NC_006146.1 + 2305 0.68 0.901322
Target:  5'- uCGGGUCGCGGGAcacgcccccgggucCCCCGGCAcgcGCcgGGCc -3'
miRNA:   3'- uGCCCGGUGUUUU--------------GGGGCUGU---UG--UCG- -5'
28928 3' -54 NC_006146.1 + 2448 0.69 0.89679
Target:  5'- -gGGGCCGgGGGcgcGgCCCGGCGcCAGCc -3'
miRNA:   3'- ugCCCGGUgUUU---UgGGGCUGUuGUCG- -5'
28928 3' -54 NC_006146.1 + 2719 0.69 0.890118
Target:  5'- cCGGGCC-Cu---CCCCGACAucCAGg -3'
miRNA:   3'- uGCCCGGuGuuuuGGGGCUGUu-GUCg -5'
28928 3' -54 NC_006146.1 + 2793 0.66 0.969611
Target:  5'- cCGGGCgCGCGccggccucccgucccGAagGCCCUGGCA-CAGUg -3'
miRNA:   3'- uGCCCG-GUGU---------------UU--UGGGGCUGUuGUCG- -5'
28928 3' -54 NC_006146.1 + 3097 0.72 0.746568
Target:  5'- gGCGGGCCACGc-GCgCCCGcCAcgccCAGCu -3'
miRNA:   3'- -UGCCCGGUGUuuUG-GGGCuGUu---GUCG- -5'
28928 3' -54 NC_006146.1 + 3237 0.68 0.901322
Target:  5'- uCGGGUCGCGGGAcacgcccccgggucCCCCGGCAcgcGCcgGGCc -3'
miRNA:   3'- uGCCCGGUGUUUU--------------GGGGCUGU---UG--UCG- -5'
28928 3' -54 NC_006146.1 + 3380 0.69 0.89679
Target:  5'- -gGGGCCGgGGGcgcGgCCCGGCGcCAGCc -3'
miRNA:   3'- ugCCCGGUgUUU---UgGGGCUGUuGUCG- -5'
28928 3' -54 NC_006146.1 + 3651 0.69 0.890118
Target:  5'- cCGGGCC-Cu---CCCCGACAucCAGg -3'
miRNA:   3'- uGCCCGGuGuuuuGGGGCUGUu-GUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.