miRNA display CGI


Results 1 - 20 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28928 3' -54 NC_006146.1 + 6576 1.12 0.003082
Target:  5'- aACGGGCCACAAAACCCCGACAACAGCa -3'
miRNA:   3'- -UGCCCGGUGUUUUGGGGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 10830 0.85 0.177932
Target:  5'- cACGGGCCACAGGugCCUGACugugccgcuccucuGCGGCa -3'
miRNA:   3'- -UGCCCGGUGUUUugGGGCUGu-------------UGUCG- -5'
28928 3' -54 NC_006146.1 + 34144 0.85 0.180654
Target:  5'- cCGGGCCuccCGGAGCCCCGGCGAgGGUg -3'
miRNA:   3'- uGCCCGGu--GUUUUGGGGCUGUUgUCG- -5'
28928 3' -54 NC_006146.1 + 72572 0.82 0.267807
Target:  5'- gACGGGCCGCGcccGGCCCCGugccaGACGGCc -3'
miRNA:   3'- -UGCCCGGUGUu--UUGGGGCug---UUGUCG- -5'
28928 3' -54 NC_006146.1 + 78829 0.8 0.345581
Target:  5'- cCGGGCCGCc---CCCCG-CAGCAGCc -3'
miRNA:   3'- uGCCCGGUGuuuuGGGGCuGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 129737 0.8 0.353404
Target:  5'- cACGGGCCGCcuccGACCCCGAC--CAGUc -3'
miRNA:   3'- -UGCCCGGUGuu--UUGGGGCUGuuGUCG- -5'
28928 3' -54 NC_006146.1 + 151377 0.79 0.361352
Target:  5'- -gGGGCC-CuGGGCCCCGAgGGCGGCu -3'
miRNA:   3'- ugCCCGGuGuUUUGGGGCUgUUGUCG- -5'
28928 3' -54 NC_006146.1 + 142143 0.79 0.361352
Target:  5'- -gGGGCC-CuGGGCCCCGAgGGCGGCu -3'
miRNA:   3'- ugCCCGGuGuUUUGGGGCUgUUGUCG- -5'
28928 3' -54 NC_006146.1 + 145221 0.79 0.361352
Target:  5'- -gGGGCC-CuGGGCCCCGAgGGCGGCu -3'
miRNA:   3'- ugCCCGGuGuUUUGGGGCUgUUGUCG- -5'
28928 3' -54 NC_006146.1 + 154455 0.79 0.361352
Target:  5'- -gGGGCC-CuGGGCCCCGAgGGCGGCu -3'
miRNA:   3'- ugCCCGGuGuUUUGGGGCUgUUGUCG- -5'
28928 3' -54 NC_006146.1 + 157533 0.79 0.361352
Target:  5'- -gGGGCC-CuGGGCCCCGAgGGCGGCu -3'
miRNA:   3'- ugCCCGGuGuUUUGGGGCUgUUGUCG- -5'
28928 3' -54 NC_006146.1 + 148299 0.79 0.361352
Target:  5'- -gGGGCC-CuGGGCCCCGAgGGCGGCu -3'
miRNA:   3'- ugCCCGGuGuUUUGGGGCUgUUGUCG- -5'
28928 3' -54 NC_006146.1 + 159278 0.79 0.369424
Target:  5'- cGCGGGCCuCGGGGCCCUcGCAGuCGGCa -3'
miRNA:   3'- -UGCCCGGuGUUUUGGGGcUGUU-GUCG- -5'
28928 3' -54 NC_006146.1 + 115201 0.79 0.394369
Target:  5'- gGCGGGCagaGCc---CCCCGGCGGCGGCc -3'
miRNA:   3'- -UGCCCGg--UGuuuuGGGGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 69817 0.78 0.420379
Target:  5'- gAUGGGCCGCGAAgugcuGCCCCacaGCAugAGCc -3'
miRNA:   3'- -UGCCCGGUGUUU-----UGGGGc--UGUugUCG- -5'
28928 3' -54 NC_006146.1 + 68841 0.78 0.432866
Target:  5'- aGCGGGCU-CAAGGCCCUgcuggcaagcaggcuGGCGACAGCc -3'
miRNA:   3'- -UGCCCGGuGUUUUGGGG---------------CUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 137885 0.78 0.438284
Target:  5'- cCGGGCCgGCAGGggguCCCCGugGACAGg -3'
miRNA:   3'- uGCCCGG-UGUUUu---GGGGCugUUGUCg -5'
28928 3' -54 NC_006146.1 + 76781 0.77 0.456618
Target:  5'- aACGGGCCAgAAcGCCCCcAC-ACGGCu -3'
miRNA:   3'- -UGCCCGGUgUUuUGGGGcUGuUGUCG- -5'
28928 3' -54 NC_006146.1 + 137510 0.77 0.456618
Target:  5'- gGCGGGCCACc---CCCCacccggagcggGGCAGCGGCc -3'
miRNA:   3'- -UGCCCGGUGuuuuGGGG-----------CUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 102168 0.77 0.475356
Target:  5'- cUGGGCCucCAccACCCCG-CGACAGCu -3'
miRNA:   3'- uGCCCGGu-GUuuUGGGGCuGUUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.