miRNA display CGI


Results 1 - 20 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28928 3' -54 NC_006146.1 + 127740 0.66 0.972478
Target:  5'- cUGGGCCGgAGAGCCuggagaagauuaucgCCGACcuCAGg -3'
miRNA:   3'- uGCCCGGUgUUUUGG---------------GGCUGuuGUCg -5'
28928 3' -54 NC_006146.1 + 122800 0.66 0.968407
Target:  5'- gACGGGCgGcCGAGGCCgcgcugucggCCGcCGugAGCg -3'
miRNA:   3'- -UGCCCGgU-GUUUUGG----------GGCuGUugUCG- -5'
28928 3' -54 NC_006146.1 + 117070 0.66 0.968407
Target:  5'- cCGGGaCCACAccuuCgCCCGACucuucCAGCc -3'
miRNA:   3'- uGCCC-GGUGUuuu-G-GGGCUGuu---GUCG- -5'
28928 3' -54 NC_006146.1 + 110270 0.66 0.968407
Target:  5'- --uGGCCuGCAGAGCCCCGucugccaugaugGCcuCGGCg -3'
miRNA:   3'- ugcCCGG-UGUUUUGGGGC------------UGuuGUCG- -5'
28928 3' -54 NC_006146.1 + 55446 0.66 0.968407
Target:  5'- aAUGGaGCUcCAGGACUCUGuCAugGGCa -3'
miRNA:   3'- -UGCC-CGGuGUUUUGGGGCuGUugUCG- -5'
28928 3' -54 NC_006146.1 + 124153 0.66 0.968407
Target:  5'- uCGGGagGCGAgGACCCUGGC--CAGCg -3'
miRNA:   3'- uGCCCggUGUU-UUGGGGCUGuuGUCG- -5'
28928 3' -54 NC_006146.1 + 59449 0.66 0.968407
Target:  5'- -aGGGCaggggGCAGGAcuCCCCGAUGAUggaGGCa -3'
miRNA:   3'- ugCCCGg----UGUUUU--GGGGCUGUUG---UCG- -5'
28928 3' -54 NC_006146.1 + 19509 0.66 0.968407
Target:  5'- cCGcGCCAUc---CCCCGccuGCAGCAGCg -3'
miRNA:   3'- uGCcCGGUGuuuuGGGGC---UGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 44279 0.66 0.968407
Target:  5'- -aGGGCUGCAGAGCUaCC-ACAAC-GCa -3'
miRNA:   3'- ugCCCGGUGUUUUGG-GGcUGUUGuCG- -5'
28928 3' -54 NC_006146.1 + 138756 0.66 0.968407
Target:  5'- aGCGGccuGCCACG--GCCCUGGCuAACcuGCu -3'
miRNA:   3'- -UGCC---CGGUGUuuUGGGGCUG-UUGu-CG- -5'
28928 3' -54 NC_006146.1 + 114283 0.66 0.968407
Target:  5'- cAUGGcuGCCACuauGGACgCCGGCGaggagaccgGCGGCg -3'
miRNA:   3'- -UGCC--CGGUGu--UUUGgGGCUGU---------UGUCG- -5'
28928 3' -54 NC_006146.1 + 929 0.66 0.969611
Target:  5'- cCGGGCgCGCGccggccucccgucccGAagGCCCUGGCA-CAGUg -3'
miRNA:   3'- uGCCCG-GUGU---------------UU--UGGGGCUGUuGUCG- -5'
28928 3' -54 NC_006146.1 + 54668 0.66 0.971356
Target:  5'- aGCuGGCC-CcGAAUCCCGcCGACAaGCg -3'
miRNA:   3'- -UGcCCGGuGuUUUGGGGCuGUUGU-CG- -5'
28928 3' -54 NC_006146.1 + 168354 0.66 0.971356
Target:  5'- gUGGGCUgaaGAAccagguGCCCCGaguaggugucucGCAGCGGCg -3'
miRNA:   3'- uGCCCGGug-UUU------UGGGGC------------UGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 49754 0.66 0.971356
Target:  5'- -gGGGCgCGCGgcccAGGCCCaGACGcCGGCu -3'
miRNA:   3'- ugCCCG-GUGU----UUUGGGgCUGUuGUCG- -5'
28928 3' -54 NC_006146.1 + 8007 0.66 0.971356
Target:  5'- gGCGcGCgGCAGGACUgCGAgGACuGCa -3'
miRNA:   3'- -UGCcCGgUGUUUUGGgGCUgUUGuCG- -5'
28928 3' -54 NC_006146.1 + 49081 0.66 0.971356
Target:  5'- -aGGGCU--GAGGCUCCGGCuguggcucaGGCGGCu -3'
miRNA:   3'- ugCCCGGugUUUUGGGGCUG---------UUGUCG- -5'
28928 3' -54 NC_006146.1 + 3725 0.66 0.969611
Target:  5'- cCGGGCgCGCGccggccucccgucccGAagGCCCUGGCA-CAGUg -3'
miRNA:   3'- uGCCCG-GUGU---------------UU--UGGGGCUGUuGUCG- -5'
28928 3' -54 NC_006146.1 + 2793 0.66 0.969611
Target:  5'- cCGGGCgCGCGccggccucccgucccGAagGCCCUGGCA-CAGUg -3'
miRNA:   3'- uGCCCG-GUGU---------------UU--UGGGGCUGUuGUCG- -5'
28928 3' -54 NC_006146.1 + 1861 0.66 0.969611
Target:  5'- cCGGGCgCGCGccggccucccgucccGAagGCCCUGGCA-CAGUg -3'
miRNA:   3'- uGCCCG-GUGU---------------UU--UGGGGCUGUuGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.