miRNA display CGI


Results 41 - 60 of 458 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28930 3' -66 NC_006146.1 + 77838 0.66 0.486523
Target:  5'- aGGgGGGGGCGGGGG--GguGGgACUUu -3'
miRNA:   3'- -CCgUCCCCGCCCCCggUguCCgUGGG- -5'
28930 3' -66 NC_006146.1 + 41471 0.66 0.486523
Target:  5'- uGGCAGcGGCGGugauguugcuGGGCCuuggggugcGCGGGgacgaCGCCCg -3'
miRNA:   3'- -CCGUCcCCGCC----------CCCGG---------UGUCC-----GUGGG- -5'
28930 3' -66 NC_006146.1 + 26253 0.66 0.486523
Target:  5'- uGGcCAGaGGUGGGGG-CACGGGUggcggaauuaGCCUg -3'
miRNA:   3'- -CC-GUCcCCGCCCCCgGUGUCCG----------UGGG- -5'
28930 3' -66 NC_006146.1 + 46722 0.66 0.48564
Target:  5'- cGGCGGcuccgaggcGGGCGGaGGCCACgcuggccAGGguCCUc -3'
miRNA:   3'- -CCGUC---------CCCGCCcCCGGUG-------UCCguGGG- -5'
28930 3' -66 NC_006146.1 + 156829 0.66 0.48564
Target:  5'- gGGgAGGGGUGGGGaGUgGCcagggaggacggaGGGCcugGCCUg -3'
miRNA:   3'- -CCgUCCCCGCCCC-CGgUG-------------UCCG---UGGG- -5'
28930 3' -66 NC_006146.1 + 147596 0.66 0.48564
Target:  5'- gGGgAGGGGUGGGGaGUgGCcagggaggacggaGGGCcugGCCUg -3'
miRNA:   3'- -CCgUCCCCGCCCC-CGgUG-------------UCCG---UGGG- -5'
28930 3' -66 NC_006146.1 + 144518 0.66 0.48564
Target:  5'- gGGgAGGGGUGGGGaGUgGCcagggaggacggaGGGCcugGCCUg -3'
miRNA:   3'- -CCgUCCCCGCCCC-CGgUG-------------UCCG---UGGG- -5'
28930 3' -66 NC_006146.1 + 141440 0.66 0.48564
Target:  5'- gGGgAGGGGUGGGGaGUgGCcagggaggacggaGGGCcugGCCUg -3'
miRNA:   3'- -CCgUCCCCGCCCC-CGgUG-------------UCCG---UGGG- -5'
28930 3' -66 NC_006146.1 + 153751 0.66 0.48564
Target:  5'- gGGgAGGGGUGGGGaGUgGCcagggaggacggaGGGCcugGCCUg -3'
miRNA:   3'- -CCgUCCCCGCCCC-CGgUG-------------UCCG---UGGG- -5'
28930 3' -66 NC_006146.1 + 169535 0.66 0.481235
Target:  5'- gGGCgugucccgcgacccgAGGGGCgagcgGGGGGCUucccCGGG-GCCCg -3'
miRNA:   3'- -CCG---------------UCCCCG-----CCCCCGGu---GUCCgUGGG- -5'
28930 3' -66 NC_006146.1 + 167670 0.66 0.481235
Target:  5'- gGGCgugucccgcgacccgAGGGGCgagcgGGGGGCUucccCGGG-GCCCg -3'
miRNA:   3'- -CCG---------------UCCCCG-----CCCCCGGu---GUCCgUGGG- -5'
28930 3' -66 NC_006146.1 + 168603 0.66 0.481235
Target:  5'- gGGCgugucccgcgacccgAGGGGCgagcgGGGGGCUucccCGGG-GCCCg -3'
miRNA:   3'- -CCG---------------UCCCCG-----CCCCCGGu---GUCCgUGGG- -5'
28930 3' -66 NC_006146.1 + 115939 0.66 0.477725
Target:  5'- gGGCAGcGGuaGCGGcGGCgGCGGuCGCCCc -3'
miRNA:   3'- -CCGUC-CC--CGCCcCCGgUGUCcGUGGG- -5'
28930 3' -66 NC_006146.1 + 9461 0.66 0.477725
Target:  5'- cGguGGGcGCGGGGuCCGCGcccucuGGCAUCa -3'
miRNA:   3'- cCguCCC-CGCCCCcGGUGU------CCGUGGg -5'
28930 3' -66 NC_006146.1 + 70547 0.66 0.477725
Target:  5'- gGGCGGuGGUGGGGuaUAUGGGUugugggcaucguGCCCg -3'
miRNA:   3'- -CCGUCcCCGCCCCcgGUGUCCG------------UGGG- -5'
28930 3' -66 NC_006146.1 + 49494 0.66 0.477725
Target:  5'- cGGcCAGGGGCGGcGuGGCaucuggaucgGCGGGUgAUCCg -3'
miRNA:   3'- -CC-GUCCCCGCC-C-CCGg---------UGUCCG-UGGG- -5'
28930 3' -66 NC_006146.1 + 54877 0.66 0.477725
Target:  5'- gGGCuGcGGGCGuagcGGGGuCCGCucGCGCCg -3'
miRNA:   3'- -CCGuC-CCCGC----CCCC-GGUGucCGUGGg -5'
28930 3' -66 NC_006146.1 + 48331 0.66 0.472484
Target:  5'- uGGCGGuGGUGGGccaggcguccagucuGGCCAgCGGGCcgGCCUc -3'
miRNA:   3'- -CCGUCcCCGCCC---------------CCGGU-GUCCG--UGGG- -5'
28930 3' -66 NC_006146.1 + 79710 0.66 0.469006
Target:  5'- aGGCAGGcGG-GGGGGa-ACAGGaaACCUg -3'
miRNA:   3'- -CCGUCC-CCgCCCCCggUGUCCg-UGGG- -5'
28930 3' -66 NC_006146.1 + 33318 0.66 0.469006
Target:  5'- cGGUccuGGGGCuccGGGGUC-CGGGUGCuCCg -3'
miRNA:   3'- -CCGu--CCCCGc--CCCCGGuGUCCGUG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.