miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28940 5' -49 NC_006146.1 + 7564 0.77 0.712671
Target:  5'- -aGGAUAaCAUAUGCUACCCAaaGCUAGg -3'
miRNA:   3'- acCCUAUcGUAUACGAUGGGU--UGAUU- -5'
28940 5' -49 NC_006146.1 + 7751 0.76 0.774852
Target:  5'- -aGGAUAGUAUAcaCUACCCAACUAAa -3'
miRNA:   3'- acCCUAUCGUAUacGAUGGGUUGAUU- -5'
28940 5' -49 NC_006146.1 + 163073 0.75 0.784769
Target:  5'- cUGuGGGUAGCAUAUGCUAuCCUAAUUu- -3'
miRNA:   3'- -AC-CCUAUCGUAUACGAU-GGGUUGAuu -5'
28940 5' -49 NC_006146.1 + 163404 0.75 0.79453
Target:  5'- --uGAUAGCAUAUGCUAUCCuACUAu -3'
miRNA:   3'- accCUAUCGUAUACGAUGGGuUGAUu -5'
28940 5' -49 NC_006146.1 + 7698 0.75 0.79453
Target:  5'- -nGGAUAGUAUAcaCUACCCAACUAAa -3'
miRNA:   3'- acCCUAUCGUAUacGAUGGGUUGAUU- -5'
28940 5' -49 NC_006146.1 + 7804 0.75 0.79453
Target:  5'- -nGGAUAGUAUAcaCUACCCAACUAAa -3'
miRNA:   3'- acCCUAUCGUAUacGAUGGGUUGAUU- -5'
28940 5' -49 NC_006146.1 + 70510 0.75 0.813537
Target:  5'- gGGGAUggcugaaaugAGCGUGgaggacaugGCUGCCCGGCUGg -3'
miRNA:   3'- aCCCUA----------UCGUAUa--------CGAUGGGUUGAUu -5'
28940 5' -49 NC_006146.1 + 7885 0.75 0.822763
Target:  5'- -aGGAUAGCAUAUGCUACgCAaaGCUn- -3'
miRNA:   3'- acCCUAUCGUAUACGAUGgGU--UGAuu -5'
28940 5' -49 NC_006146.1 + 163262 0.74 0.840611
Target:  5'- uUGGG-UAGCAUAUGCUAuCCUAAUUu- -3'
miRNA:   3'- -ACCCuAUCGUAUACGAU-GGGUUGAuu -5'
28940 5' -49 NC_006146.1 + 7988 0.74 0.865736
Target:  5'- -aGGAcAGCAUAUaCUACCCAGCUGu -3'
miRNA:   3'- acCCUaUCGUAUAcGAUGGGUUGAUu -5'
28940 5' -49 NC_006146.1 + 7964 0.73 0.881295
Target:  5'- --aGAUAGCAUAUGCUAuCCCAAUUu- -3'
miRNA:   3'- accCUAUCGUAUACGAU-GGGUUGAuu -5'
28940 5' -49 NC_006146.1 + 18946 0.73 0.881295
Target:  5'- cGGGAagGGCAUGUGgUGCgCCAGCg-- -3'
miRNA:   3'- aCCCUa-UCGUAUACgAUG-GGUUGauu -5'
28940 5' -49 NC_006146.1 + 163130 0.72 0.915678
Target:  5'- --cGGUAGCAUAUGCUACCCuAAUUu- -3'
miRNA:   3'- accCUAUCGUAUACGAUGGG-UUGAuu -5'
28940 5' -49 NC_006146.1 + 8043 0.72 0.927547
Target:  5'- --aGAUAGUAUAUGCUAUCCAAUa-- -3'
miRNA:   3'- accCUAUCGUAUACGAUGGGUUGauu -5'
28940 5' -49 NC_006146.1 + 8149 0.72 0.932531
Target:  5'- --uGGUAGCGUAUGCUAUCCAaaccuauACUAGg -3'
miRNA:   3'- accCUAUCGUAUACGAUGGGU-------UGAUU- -5'
28940 5' -49 NC_006146.1 + 162784 0.71 0.938322
Target:  5'- -aGGAUAGCAgAUGCUAUCCAGaUAAg -3'
miRNA:   3'- acCCUAUCGUaUACGAUGGGUUgAUU- -5'
28940 5' -49 NC_006146.1 + 163372 0.71 0.943301
Target:  5'- -aGGGUAGUAUAUGCUAUCCuaGugUAAc -3'
miRNA:   3'- acCCUAUCGUAUACGAUGGG--UugAUU- -5'
28940 5' -49 NC_006146.1 + 9333 0.71 0.956634
Target:  5'- gGcGGGUAGUAcAUaCUACCCAACUAGg -3'
miRNA:   3'- aC-CCUAUCGUaUAcGAUGGGUUGAUU- -5'
28940 5' -49 NC_006146.1 + 7536 0.7 0.964227
Target:  5'- -aGGAUAGCAUAUaCUACCCuAACa-- -3'
miRNA:   3'- acCCUAUCGUAUAcGAUGGG-UUGauu -5'
28940 5' -49 NC_006146.1 + 85138 0.7 0.973506
Target:  5'- cUGGGAUGGCcggggggGUAUGUuccUACCUAGCa-- -3'
miRNA:   3'- -ACCCUAUCG-------UAUACG---AUGGGUUGauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.