miRNA display CGI


Results 61 - 80 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28942 3' -57.1 NC_006146.1 + 137461 0.67 0.817688
Target:  5'- gGGGUGGC-CGg---GCCGcuGCCGGGUc -3'
miRNA:   3'- aCCUAUCGuGUaugaCGGC--CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 137554 0.67 0.817688
Target:  5'- gGGGUGGC-CGg---GCCGcuGCCGGGUc -3'
miRNA:   3'- aCCUAUCGuGUaugaCGGC--CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 136625 0.67 0.817688
Target:  5'- gGGGUGGC-CGg---GCCGcuGCCGGGUc -3'
miRNA:   3'- aCCUAUCGuGUaugaCGGC--CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 136532 0.67 0.817688
Target:  5'- gGGGUGGC-CGg---GCCGcuGCCGGGUc -3'
miRNA:   3'- aCCUAUCGuGUaugaCGGC--CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 136439 0.67 0.817688
Target:  5'- gGGGUGGC-CGg---GCCGcuGCCGGGUc -3'
miRNA:   3'- aCCUAUCGuGUaugaCGGC--CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 165798 0.67 0.817688
Target:  5'- -cGGUGGCACg----GCCGGCUagggGGGCg -3'
miRNA:   3'- acCUAUCGUGuaugaCGGCCGG----CCCG- -5'
28942 3' -57.1 NC_006146.1 + 135138 0.67 0.817688
Target:  5'- gGGGUGGC-CGg---GCCGcuGCCGGGUc -3'
miRNA:   3'- aCCUAUCGuGUaugaCGGC--CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 135231 0.67 0.817688
Target:  5'- gGGGUGGC-CGg---GCCGcuGCCGGGUc -3'
miRNA:   3'- aCCUAUCGuGUaugaCGGC--CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 135324 0.67 0.817688
Target:  5'- gGGGUGGC-CGg---GCCGcuGCCGGGUc -3'
miRNA:   3'- aCCUAUCGuGUaugaCGGC--CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 135417 0.67 0.817688
Target:  5'- gGGGUGGC-CGg---GCCGcuGCCGGGUc -3'
miRNA:   3'- aCCUAUCGuGUaugaCGGC--CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 135510 0.67 0.817688
Target:  5'- gGGGUGGC-CGg---GCCGcuGCCGGGUc -3'
miRNA:   3'- aCCUAUCGuGUaugaCGGC--CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 135603 0.67 0.817688
Target:  5'- gGGGUGGC-CGg---GCCGcuGCCGGGUc -3'
miRNA:   3'- aCCUAUCGuGUaugaCGGC--CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 135696 0.67 0.817688
Target:  5'- gGGGUGGC-CGg---GCCGcuGCCGGGUc -3'
miRNA:   3'- aCCUAUCGuGUaugaCGGC--CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 135788 0.67 0.817688
Target:  5'- gGGGUGGC-CGg---GCCGcuGCCGGGUc -3'
miRNA:   3'- aCCUAUCGuGUaugaCGGC--CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 135881 0.67 0.817688
Target:  5'- gGGGUGGC-CGg---GCCGcuGCCGGGUc -3'
miRNA:   3'- aCCUAUCGuGUaugaCGGC--CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 135974 0.67 0.817688
Target:  5'- gGGGUGGC-CGg---GCCGcuGCCGGGUc -3'
miRNA:   3'- aCCUAUCGuGUaugaCGGC--CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 136067 0.67 0.817688
Target:  5'- gGGGUGGC-CGg---GCCGcuGCCGGGUc -3'
miRNA:   3'- aCCUAUCGuGUaugaCGGC--CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 136160 0.67 0.817688
Target:  5'- gGGGUGGC-CGg---GCCGcuGCCGGGUc -3'
miRNA:   3'- aCCUAUCGuGUaugaCGGC--CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 136346 0.67 0.817688
Target:  5'- gGGGUGGC-CGg---GCCGcuGCCGGGUc -3'
miRNA:   3'- aCCUAUCGuGUaugaCGGC--CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 129631 0.67 0.817688
Target:  5'- cGGGUccuccgcgGGCGCGUGCU-CCGcCCGGGa -3'
miRNA:   3'- aCCUA--------UCGUGUAUGAcGGCcGGCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.