miRNA display CGI


Results 41 - 60 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28942 3' -57.1 NC_006146.1 + 68244 0.67 0.850485
Target:  5'- gGGGaGGCGCGgcugacagagACUGCCaGCCccGGGUg -3'
miRNA:   3'- aCCUaUCGUGUa---------UGACGGcCGG--CCCG- -5'
28942 3' -57.1 NC_006146.1 + 103566 0.67 0.84256
Target:  5'- aGGAUGG-GCucGCccggGCCugGGCCGGGCu -3'
miRNA:   3'- aCCUAUCgUGuaUGa---CGG--CCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 38279 0.67 0.84256
Target:  5'- cUGGAgcgGGC-CAcACUGCCGGCCc--- -3'
miRNA:   3'- -ACCUa--UCGuGUaUGACGGCCGGcccg -5'
28942 3' -57.1 NC_006146.1 + 167749 0.67 0.84256
Target:  5'- -cGAUcagGGCGCAggg-GCCGGgUGGGCg -3'
miRNA:   3'- acCUA---UCGUGUaugaCGGCCgGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 100008 0.67 0.834447
Target:  5'- gGGAgcgGGCACGUcgGgaGgCGGCgGGGUc -3'
miRNA:   3'- aCCUa--UCGUGUA--UgaCgGCCGgCCCG- -5'
28942 3' -57.1 NC_006146.1 + 13537 0.67 0.834447
Target:  5'- gUGGAcAGgaACcUGCUGCagGcGCCGGGCg -3'
miRNA:   3'- -ACCUaUCg-UGuAUGACGg-C-CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 49472 0.67 0.834447
Target:  5'- gGGAUGGUGaggGCcgcggUGUCGGCCagGGGCg -3'
miRNA:   3'- aCCUAUCGUguaUG-----ACGGCCGG--CCCG- -5'
28942 3' -57.1 NC_006146.1 + 155689 0.67 0.834447
Target:  5'- aGGAUGGCccgGUACUGCgGGuUCGaGGUg -3'
miRNA:   3'- aCCUAUCGug-UAUGACGgCC-GGC-CCG- -5'
28942 3' -57.1 NC_006146.1 + 167505 0.67 0.826154
Target:  5'- gGGAgagGGgGCAggGCUGgC-GCCGGGCc -3'
miRNA:   3'- aCCUa--UCgUGUa-UGACgGcCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 168437 0.67 0.826154
Target:  5'- gGGAgagGGgGCAggGCUGgC-GCCGGGCc -3'
miRNA:   3'- aCCUa--UCgUGUa-UGACgGcCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 169369 0.67 0.826154
Target:  5'- gGGAgagGGgGCAggGCUGgC-GCCGGGCc -3'
miRNA:   3'- aCCUa--UCgUGUa-UGACgGcCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 170300 0.67 0.826154
Target:  5'- gGGAgagGGgGCAggGCUGgC-GCCGGGCc -3'
miRNA:   3'- aCCUa--UCgUGUa-UGACgGcCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 136160 0.67 0.817688
Target:  5'- gGGGUGGC-CGg---GCCGcuGCCGGGUc -3'
miRNA:   3'- aCCUAUCGuGUaugaCGGC--CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 136067 0.67 0.817688
Target:  5'- gGGGUGGC-CGg---GCCGcuGCCGGGUc -3'
miRNA:   3'- aCCUAUCGuGUaugaCGGC--CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 135974 0.67 0.817688
Target:  5'- gGGGUGGC-CGg---GCCGcuGCCGGGUc -3'
miRNA:   3'- aCCUAUCGuGUaugaCGGC--CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 135881 0.67 0.817688
Target:  5'- gGGGUGGC-CGg---GCCGcuGCCGGGUc -3'
miRNA:   3'- aCCUAUCGuGUaugaCGGC--CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 135788 0.67 0.817688
Target:  5'- gGGGUGGC-CGg---GCCGcuGCCGGGUc -3'
miRNA:   3'- aCCUAUCGuGUaugaCGGC--CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 135696 0.67 0.817688
Target:  5'- gGGGUGGC-CGg---GCCGcuGCCGGGUc -3'
miRNA:   3'- aCCUAUCGuGUaugaCGGC--CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 136903 0.67 0.817688
Target:  5'- gGGGUGGC-CGg---GCCGcuGCCGGGUc -3'
miRNA:   3'- aCCUAUCGuGUaugaCGGC--CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 137554 0.67 0.817688
Target:  5'- gGGGUGGC-CGg---GCCGcuGCCGGGUc -3'
miRNA:   3'- aCCUAUCGuGUaugaCGGC--CGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.