miRNA display CGI


Results 41 - 60 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28942 3' -57.1 NC_006146.1 + 46954 0.68 0.78225
Target:  5'- aGGGUGccCGCGUAUUucGCCGGCCcGGCc -3'
miRNA:   3'- aCCUAUc-GUGUAUGA--CGGCCGGcCCG- -5'
28942 3' -57.1 NC_006146.1 + 48025 0.73 0.486731
Target:  5'- gGGGaGGCACGgcggGCCGGCuCGGGUc -3'
miRNA:   3'- aCCUaUCGUGUaugaCGGCCG-GCCCG- -5'
28942 3' -57.1 NC_006146.1 + 49078 0.68 0.763704
Target:  5'- aGGAgGGCugAgGCU-CCGGCUGuGGCu -3'
miRNA:   3'- aCCUaUCGugUaUGAcGGCCGGC-CCG- -5'
28942 3' -57.1 NC_006146.1 + 49472 0.67 0.834447
Target:  5'- gGGAUGGUGaggGCcgcggUGUCGGCCagGGGCg -3'
miRNA:   3'- aCCUAUCGUguaUG-----ACGGCCGG--CCCG- -5'
28942 3' -57.1 NC_006146.1 + 50178 0.66 0.88708
Target:  5'- gGGGgcguuuGCACuUGCgGCgGGCuCGGGUa -3'
miRNA:   3'- aCCUau----CGUGuAUGaCGgCCG-GCCCG- -5'
28942 3' -57.1 NC_006146.1 + 50891 0.66 0.880183
Target:  5'- cGGAcUGGCGCGgg-UG-CGGCCuGGGCc -3'
miRNA:   3'- aCCU-AUCGUGUaugACgGCCGG-CCCG- -5'
28942 3' -57.1 NC_006146.1 + 51973 0.71 0.604784
Target:  5'- cGGggAGguCuccgGCaUGCgGGCCGGGCg -3'
miRNA:   3'- aCCuaUCguGua--UG-ACGgCCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 52301 0.66 0.873071
Target:  5'- aGGAUGucauGCGCGUagguGCUGaCCcugacgugGGCCGGGg -3'
miRNA:   3'- aCCUAU----CGUGUA----UGAC-GG--------CCGGCCCg -5'
28942 3' -57.1 NC_006146.1 + 52978 0.74 0.423026
Target:  5'- cGGuaguGCGCAggcggacCUGCCGGCCGuGGCc -3'
miRNA:   3'- aCCuau-CGUGUau-----GACGGCCGGC-CCG- -5'
28942 3' -57.1 NC_006146.1 + 53466 0.66 0.88708
Target:  5'- cGGGaGGCGCGgg-UGCCucgucggucagGGCCGGGg -3'
miRNA:   3'- aCCUaUCGUGUaugACGG-----------CCGGCCCg -5'
28942 3' -57.1 NC_006146.1 + 54019 0.8 0.208699
Target:  5'- cUGGAgcaGGCAC-UGCUGCgccUGGCCGGGCc -3'
miRNA:   3'- -ACCUa--UCGUGuAUGACG---GCCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 55684 0.66 0.873071
Target:  5'- aGGccAGCACGggcACgGCCGccGCCGGGg -3'
miRNA:   3'- aCCuaUCGUGUa--UGaCGGC--CGGCCCg -5'
28942 3' -57.1 NC_006146.1 + 61418 0.7 0.655427
Target:  5'- cUGcGGUGGC-CA-ACgcggGCaCGGCCGGGCu -3'
miRNA:   3'- -AC-CUAUCGuGUaUGa---CG-GCCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 61588 0.66 0.88708
Target:  5'- aGGA-AGaGCcgGCUGCagCGGCCGcGGCc -3'
miRNA:   3'- aCCUaUCgUGuaUGACG--GCCGGC-CCG- -5'
28942 3' -57.1 NC_006146.1 + 64224 0.71 0.604784
Target:  5'- aGGA-GGCACAU-CUGCgccugGGCCGGGg -3'
miRNA:   3'- aCCUaUCGUGUAuGACGg----CCGGCCCg -5'
28942 3' -57.1 NC_006146.1 + 64457 0.68 0.800267
Target:  5'- uUGGGUGGCGCugucCUGCUGaa-GGGCa -3'
miRNA:   3'- -ACCUAUCGUGuau-GACGGCcggCCCG- -5'
28942 3' -57.1 NC_006146.1 + 65476 0.68 0.800267
Target:  5'- cGGGcuguGCGgGUGCUgaGCUGGCCGGcGUg -3'
miRNA:   3'- aCCUau--CGUgUAUGA--CGGCCGGCC-CG- -5'
28942 3' -57.1 NC_006146.1 + 67207 0.66 0.865747
Target:  5'- cUGGccGUGGC-CGgucGCcugGCCGGCCaGGCa -3'
miRNA:   3'- -ACC--UAUCGuGUa--UGa--CGGCCGGcCCG- -5'
28942 3' -57.1 NC_006146.1 + 67597 0.67 0.809056
Target:  5'- gUGGGccagauagacgUAGCGCAcgagGUCGGCCGaGGCc -3'
miRNA:   3'- -ACCU-----------AUCGUGUaugaCGGCCGGC-CCG- -5'
28942 3' -57.1 NC_006146.1 + 68244 0.67 0.850485
Target:  5'- gGGGaGGCGCGgcugacagagACUGCCaGCCccGGGUg -3'
miRNA:   3'- aCCUaUCGUGUa---------UGACGGcCGG--CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.