miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28942 3' -57.1 NC_006146.1 + 32813 0.68 0.78225
Target:  5'- gGGGU-GCACA-ACccccaGCCGGCCcGGCg -3'
miRNA:   3'- aCCUAuCGUGUaUGa----CGGCCGGcCCG- -5'
28942 3' -57.1 NC_006146.1 + 33111 0.68 0.773039
Target:  5'- cGGGUGGcCGCcgGCggGUUcGCCGGGCc -3'
miRNA:   3'- aCCUAUC-GUGuaUGa-CGGcCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 33152 0.69 0.705605
Target:  5'- cGGGUGGgGgGUGgc-CCGGCUGGGCa -3'
miRNA:   3'- aCCUAUCgUgUAUgacGGCCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 33235 0.71 0.614902
Target:  5'- cGGGUGGcCGCcgGCggGUCcGCCGGGCc -3'
miRNA:   3'- aCCUAUC-GUGuaUGa-CGGcCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 33276 0.69 0.705605
Target:  5'- cGGGUGGgGgGUGgc-CCGGCUGGGCa -3'
miRNA:   3'- aCCUAUCgUgUAUgacGGCCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 34026 0.67 0.814255
Target:  5'- cGGGgcaGGCggGCGUGgucccggggccuaUGCCGGCCGGGg -3'
miRNA:   3'- aCCUa--UCG--UGUAUg------------ACGGCCGGCCCg -5'
28942 3' -57.1 NC_006146.1 + 36220 0.73 0.496207
Target:  5'- cGGG-AGCGCAa---GCCGGCCGGGg -3'
miRNA:   3'- aCCUaUCGUGUaugaCGGCCGGCCCg -5'
28942 3' -57.1 NC_006146.1 + 37869 0.7 0.665533
Target:  5'- -aGAUAG-GCAUAgaGCaGGCCGGGCu -3'
miRNA:   3'- acCUAUCgUGUAUgaCGgCCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 38279 0.67 0.84256
Target:  5'- cUGGAgcgGGC-CAcACUGCCGGCCc--- -3'
miRNA:   3'- -ACCUa--UCGuGUaUGACGGCCGGcccg -5'
28942 3' -57.1 NC_006146.1 + 38810 0.68 0.773039
Target:  5'- gGGGU-GCACAU-CUGCagccaGGCCcugagccugGGGCa -3'
miRNA:   3'- aCCUAuCGUGUAuGACGg----CCGG---------CCCG- -5'
28942 3' -57.1 NC_006146.1 + 39519 0.66 0.893755
Target:  5'- gUGGGUGGCugAUggGCUGggggaggCGGCgcaaGGGCu -3'
miRNA:   3'- -ACCUAUCGugUA--UGACg------GCCGg---CCCG- -5'
28942 3' -57.1 NC_006146.1 + 39841 0.66 0.88708
Target:  5'- cGGcc-GCACAguggGCCGGCgGGGg -3'
miRNA:   3'- aCCuauCGUGUaugaCGGCCGgCCCg -5'
28942 3' -57.1 NC_006146.1 + 39878 0.66 0.865747
Target:  5'- gGGAggaGGCugAgGCUGagCGGCCugcgGGGCg -3'
miRNA:   3'- aCCUa--UCGugUaUGACg-GCCGG----CCCG- -5'
28942 3' -57.1 NC_006146.1 + 40275 0.72 0.554627
Target:  5'- aGGGaGGCGCGggcggagGCggGCCaaagaGGCCGGGCa -3'
miRNA:   3'- aCCUaUCGUGUa------UGa-CGG-----CCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 41610 0.68 0.800267
Target:  5'- cGGggGGCugGU-CcGCUGGgcCCGGGCg -3'
miRNA:   3'- aCCuaUCGugUAuGaCGGCC--GGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 42439 0.69 0.715492
Target:  5'- cUGGGUGcGCGCcgccaGCaUGgCGGCCGGGUc -3'
miRNA:   3'- -ACCUAU-CGUGua---UG-ACgGCCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 43513 0.71 0.594685
Target:  5'- aGGGUccgGGC-CAgGCUGCCGGCCaccaucagugGGGUg -3'
miRNA:   3'- aCCUA---UCGuGUaUGACGGCCGG----------CCCG- -5'
28942 3' -57.1 NC_006146.1 + 45398 0.7 0.645303
Target:  5'- gGGGUugAGCACGUcggugggccagcGCgagGCCccGGCCGGGUu -3'
miRNA:   3'- aCCUA--UCGUGUA------------UGa--CGG--CCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 46782 0.74 0.440726
Target:  5'- cGGAUGGCug-----GCCGGCCGGcGCg -3'
miRNA:   3'- aCCUAUCGuguaugaCGGCCGGCC-CG- -5'
28942 3' -57.1 NC_006146.1 + 46921 0.66 0.865747
Target:  5'- gGGAgaggAGCACGUGCUgaGCCuGCUcuuuGGCa -3'
miRNA:   3'- aCCUa---UCGUGUAUGA--CGGcCGGc---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.