miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28942 3' -57.1 NC_006146.1 + 160237 0.68 0.763704
Target:  5'- cUGGGUAGagaACAUgauuuucaguaACaGCCcuGGCCGGGUa -3'
miRNA:   3'- -ACCUAUCg--UGUA-----------UGaCGG--CCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 159833 0.66 0.893755
Target:  5'- cGGGUGGgGCAacCUGUgGGC-GGGUg -3'
miRNA:   3'- aCCUAUCgUGUauGACGgCCGgCCCG- -5'
28942 3' -57.1 NC_006146.1 + 158866 0.71 0.635169
Target:  5'- cUGG-UGGCcgcacccgccACGUaGCUGCCGGUcuCGGGCa -3'
miRNA:   3'- -ACCuAUCG----------UGUA-UGACGGCCG--GCCCG- -5'
28942 3' -57.1 NC_006146.1 + 157710 0.7 0.695656
Target:  5'- aGGA-GGCGCccGgaGCgaGGCCGGGCa -3'
miRNA:   3'- aCCUaUCGUGuaUgaCGg-CCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 157041 0.66 0.893755
Target:  5'- gGGAcgcUGGCACAccggGCCG-CCGGGg -3'
miRNA:   3'- aCCU---AUCGUGUaugaCGGCcGGCCCg -5'
28942 3' -57.1 NC_006146.1 + 156087 0.66 0.858216
Target:  5'- gUGGGcuucUGGCGCucugAUGCUGCCagaaauaguuGCUGGGCc -3'
miRNA:   3'- -ACCU----AUCGUG----UAUGACGGc---------CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 155689 0.67 0.834447
Target:  5'- aGGAUGGCccgGUACUGCgGGuUCGaGGUg -3'
miRNA:   3'- aCCUAUCGug-UAUGACGgCC-GGC-CCG- -5'
28942 3' -57.1 NC_006146.1 + 155226 0.66 0.858216
Target:  5'- aGGu--GUACAgGCUGUgGGUCaGGGCg -3'
miRNA:   3'- aCCuauCGUGUaUGACGgCCGG-CCCG- -5'
28942 3' -57.1 NC_006146.1 + 154680 0.68 0.791329
Target:  5'- cGGggGGCGC-UGCUGCUGGgUGGucuGCg -3'
miRNA:   3'- aCCuaUCGUGuAUGACGGCCgGCC---CG- -5'
28942 3' -57.1 NC_006146.1 + 154633 0.7 0.695656
Target:  5'- aGGA-GGCGCccGgaGCgaGGCCGGGCa -3'
miRNA:   3'- aCCUaUCGUGuaUgaCGg-CCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 153963 0.66 0.893755
Target:  5'- gGGAcgcUGGCACAccggGCCG-CCGGGg -3'
miRNA:   3'- aCCU---AUCGUGUaugaCGGCcGGCCCg -5'
28942 3' -57.1 NC_006146.1 + 153096 0.66 0.858216
Target:  5'- gGGcgcgaGUAGCACAUGCUcUCGGagcCCGGGa -3'
miRNA:   3'- aCC-----UAUCGUGUAUGAcGGCC---GGCCCg -5'
28942 3' -57.1 NC_006146.1 + 153009 0.66 0.858216
Target:  5'- gUGGGcuucUGGCGCucugAUGCUGCCagaaauaguuGCUGGGCc -3'
miRNA:   3'- -ACCU----AUCGUG----UAUGACGGc---------CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 152231 0.71 0.614902
Target:  5'- cGuGAUAGCGuCGc-CUGCgaaGGCCGGGCa -3'
miRNA:   3'- aC-CUAUCGU-GUauGACGg--CCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 151555 0.7 0.695656
Target:  5'- aGGA-GGCGCccGgaGCgaGGCCGGGCa -3'
miRNA:   3'- aCCUaUCGUGuaUgaCGg-CCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 150885 0.66 0.893755
Target:  5'- gGGAcgcUGGCACAccggGCCG-CCGGGg -3'
miRNA:   3'- aCCU---AUCGUGUaugaCGGCcGGCCCg -5'
28942 3' -57.1 NC_006146.1 + 149931 0.66 0.858216
Target:  5'- gUGGGcuucUGGCGCucugAUGCUGCCagaaauaguuGCUGGGCc -3'
miRNA:   3'- -ACCU----AUCGUG----UAUGACGGc---------CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 148523 0.79 0.22999
Target:  5'- aGGGUGGagaGCAUGCUGCUGGCCacugccaugauGGGUg -3'
miRNA:   3'- aCCUAUCg--UGUAUGACGGCCGG-----------CCCG- -5'
28942 3' -57.1 NC_006146.1 + 148477 0.7 0.695656
Target:  5'- aGGA-GGCGCccGgaGCgaGGCCGGGCa -3'
miRNA:   3'- aCCUaUCGUGuaUgaCGg-CCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 147807 0.66 0.893755
Target:  5'- gGGAcgcUGGCACAccggGCCG-CCGGGg -3'
miRNA:   3'- aCCU---AUCGUGUaugaCGGCcGGCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.