Results 21 - 40 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28942 | 3' | -57.1 | NC_006146.1 | + | 136995 | 0.66 | 0.880183 |
Target: 5'- cGGAggAGCucCAggACggggGuaGGCCGGGCa -3' miRNA: 3'- aCCUa-UCGu-GUa-UGa---CggCCGGCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 55684 | 0.66 | 0.873071 |
Target: 5'- aGGccAGCACGggcACgGCCGccGCCGGGg -3' miRNA: 3'- aCCuaUCGUGUa--UGaCGGC--CGGCCCg -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 11356 | 0.66 | 0.858216 |
Target: 5'- cGGGccUGGCGCAggcGCUGCgcgucaGGCagguGGGCa -3' miRNA: 3'- aCCU--AUCGUGUa--UGACGg-----CCGg---CCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 143775 | 0.66 | 0.858216 |
Target: 5'- gUGGGcuucUGGCGCucugAUGCUGCCagaaauaguuGCUGGGCc -3' miRNA: 3'- -ACCU----AUCGUG----UAUGACGGc---------CGGCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 61588 | 0.66 | 0.88708 |
Target: 5'- aGGA-AGaGCcgGCUGCagCGGCCGcGGCc -3' miRNA: 3'- aCCUaUCgUGuaUGACG--GCCGGC-CCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 147807 | 0.66 | 0.893755 |
Target: 5'- gGGAcgcUGGCACAccggGCCG-CCGGGg -3' miRNA: 3'- aCCU---AUCGUGUaugaCGGCcGGCCCg -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 67207 | 0.66 | 0.865747 |
Target: 5'- cUGGccGUGGC-CGgucGCcugGCCGGCCaGGCa -3' miRNA: 3'- -ACC--UAUCGuGUa--UGa--CGGCCGGcCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 149931 | 0.66 | 0.858216 |
Target: 5'- gUGGGcuucUGGCGCucugAUGCUGCCagaaauaguuGCUGGGCc -3' miRNA: 3'- -ACCU----AUCGUG----UAUGACGGc---------CGGCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 52301 | 0.66 | 0.873071 |
Target: 5'- aGGAUGucauGCGCGUagguGCUGaCCcugacgugGGCCGGGg -3' miRNA: 3'- aCCUAU----CGUGUA----UGAC-GG--------CCGGCCCg -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 46921 | 0.66 | 0.865747 |
Target: 5'- gGGAgaggAGCACGUGCUgaGCCuGCUcuuuGGCa -3' miRNA: 3'- aCCUa---UCGUGUAUGA--CGGcCGGc---CCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 39841 | 0.66 | 0.88708 |
Target: 5'- cGGcc-GCACAguggGCCGGCgGGGg -3' miRNA: 3'- aCCuauCGUGUaugaCGGCCGgCCCg -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 159833 | 0.66 | 0.893755 |
Target: 5'- cGGGUGGgGCAacCUGUgGGC-GGGUg -3' miRNA: 3'- aCCUAUCgUGUauGACGgCCGgCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 123915 | 0.66 | 0.873071 |
Target: 5'- cGGuccgacgGGCGCAauuccugGC-GgCGGCCGGGCc -3' miRNA: 3'- aCCua-----UCGUGUa------UGaCgGCCGGCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 16166 | 0.66 | 0.873071 |
Target: 5'- aGGA-AGCcgaGCGUugucuuGCUGCUGGCCgcccugguGGGCu -3' miRNA: 3'- aCCUaUCG---UGUA------UGACGGCCGG--------CCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 153009 | 0.66 | 0.858216 |
Target: 5'- gUGGGcuucUGGCGCucugAUGCUGCCagaaauaguuGCUGGGCc -3' miRNA: 3'- -ACCU----AUCGUG----UAUGACGGc---------CGGCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 156087 | 0.66 | 0.858216 |
Target: 5'- gUGGGcuucUGGCGCucugAUGCUGCCagaaauaguuGCUGGGCc -3' miRNA: 3'- -ACCU----AUCGUG----UAUGACGGc---------CGGCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 20208 | 0.66 | 0.880183 |
Target: 5'- aGGAggcugGGCAUGUACUGCgugcaggauuCGGCCcuGGUc -3' miRNA: 3'- aCCUa----UCGUGUAUGACG----------GCCGGc-CCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 50891 | 0.66 | 0.880183 |
Target: 5'- cGGAcUGGCGCGgg-UG-CGGCCuGGGCc -3' miRNA: 3'- aCCU-AUCGUGUaugACgGCCGG-CCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 157041 | 0.66 | 0.893755 |
Target: 5'- gGGAcgcUGGCACAccggGCCG-CCGGGg -3' miRNA: 3'- aCCU---AUCGUGUaugaCGGCcGGCCCg -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 39878 | 0.66 | 0.865747 |
Target: 5'- gGGAggaGGCugAgGCUGagCGGCCugcgGGGCg -3' miRNA: 3'- aCCUa--UCGugUaUGACg-GCCGG----CCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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