miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28942 3' -57.1 NC_006146.1 + 136995 0.66 0.880183
Target:  5'- cGGAggAGCucCAggACggggGuaGGCCGGGCa -3'
miRNA:   3'- aCCUa-UCGu-GUa-UGa---CggCCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 55684 0.66 0.873071
Target:  5'- aGGccAGCACGggcACgGCCGccGCCGGGg -3'
miRNA:   3'- aCCuaUCGUGUa--UGaCGGC--CGGCCCg -5'
28942 3' -57.1 NC_006146.1 + 11356 0.66 0.858216
Target:  5'- cGGGccUGGCGCAggcGCUGCgcgucaGGCagguGGGCa -3'
miRNA:   3'- aCCU--AUCGUGUa--UGACGg-----CCGg---CCCG- -5'
28942 3' -57.1 NC_006146.1 + 143775 0.66 0.858216
Target:  5'- gUGGGcuucUGGCGCucugAUGCUGCCagaaauaguuGCUGGGCc -3'
miRNA:   3'- -ACCU----AUCGUG----UAUGACGGc---------CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 61588 0.66 0.88708
Target:  5'- aGGA-AGaGCcgGCUGCagCGGCCGcGGCc -3'
miRNA:   3'- aCCUaUCgUGuaUGACG--GCCGGC-CCG- -5'
28942 3' -57.1 NC_006146.1 + 147807 0.66 0.893755
Target:  5'- gGGAcgcUGGCACAccggGCCG-CCGGGg -3'
miRNA:   3'- aCCU---AUCGUGUaugaCGGCcGGCCCg -5'
28942 3' -57.1 NC_006146.1 + 67207 0.66 0.865747
Target:  5'- cUGGccGUGGC-CGgucGCcugGCCGGCCaGGCa -3'
miRNA:   3'- -ACC--UAUCGuGUa--UGa--CGGCCGGcCCG- -5'
28942 3' -57.1 NC_006146.1 + 149931 0.66 0.858216
Target:  5'- gUGGGcuucUGGCGCucugAUGCUGCCagaaauaguuGCUGGGCc -3'
miRNA:   3'- -ACCU----AUCGUG----UAUGACGGc---------CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 52301 0.66 0.873071
Target:  5'- aGGAUGucauGCGCGUagguGCUGaCCcugacgugGGCCGGGg -3'
miRNA:   3'- aCCUAU----CGUGUA----UGAC-GG--------CCGGCCCg -5'
28942 3' -57.1 NC_006146.1 + 46921 0.66 0.865747
Target:  5'- gGGAgaggAGCACGUGCUgaGCCuGCUcuuuGGCa -3'
miRNA:   3'- aCCUa---UCGUGUAUGA--CGGcCGGc---CCG- -5'
28942 3' -57.1 NC_006146.1 + 39841 0.66 0.88708
Target:  5'- cGGcc-GCACAguggGCCGGCgGGGg -3'
miRNA:   3'- aCCuauCGUGUaugaCGGCCGgCCCg -5'
28942 3' -57.1 NC_006146.1 + 159833 0.66 0.893755
Target:  5'- cGGGUGGgGCAacCUGUgGGC-GGGUg -3'
miRNA:   3'- aCCUAUCgUGUauGACGgCCGgCCCG- -5'
28942 3' -57.1 NC_006146.1 + 123915 0.66 0.873071
Target:  5'- cGGuccgacgGGCGCAauuccugGC-GgCGGCCGGGCc -3'
miRNA:   3'- aCCua-----UCGUGUa------UGaCgGCCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 16166 0.66 0.873071
Target:  5'- aGGA-AGCcgaGCGUugucuuGCUGCUGGCCgcccugguGGGCu -3'
miRNA:   3'- aCCUaUCG---UGUA------UGACGGCCGG--------CCCG- -5'
28942 3' -57.1 NC_006146.1 + 153009 0.66 0.858216
Target:  5'- gUGGGcuucUGGCGCucugAUGCUGCCagaaauaguuGCUGGGCc -3'
miRNA:   3'- -ACCU----AUCGUG----UAUGACGGc---------CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 156087 0.66 0.858216
Target:  5'- gUGGGcuucUGGCGCucugAUGCUGCCagaaauaguuGCUGGGCc -3'
miRNA:   3'- -ACCU----AUCGUG----UAUGACGGc---------CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 20208 0.66 0.880183
Target:  5'- aGGAggcugGGCAUGUACUGCgugcaggauuCGGCCcuGGUc -3'
miRNA:   3'- aCCUa----UCGUGUAUGACG----------GCCGGc-CCG- -5'
28942 3' -57.1 NC_006146.1 + 50891 0.66 0.880183
Target:  5'- cGGAcUGGCGCGgg-UG-CGGCCuGGGCc -3'
miRNA:   3'- aCCU-AUCGUGUaugACgGCCGG-CCCG- -5'
28942 3' -57.1 NC_006146.1 + 157041 0.66 0.893755
Target:  5'- gGGAcgcUGGCACAccggGCCG-CCGGGg -3'
miRNA:   3'- aCCU---AUCGUGUaugaCGGCcGGCCCg -5'
28942 3' -57.1 NC_006146.1 + 39878 0.66 0.865747
Target:  5'- gGGAggaGGCugAgGCUGagCGGCCugcgGGGCg -3'
miRNA:   3'- aCCUa--UCGugUaUGACg-GCCGG----CCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.