miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28942 3' -57.1 NC_006146.1 + 170300 0.67 0.826154
Target:  5'- gGGAgagGGgGCAggGCUGgC-GCCGGGCc -3'
miRNA:   3'- aCCUa--UCgUGUa-UGACgGcCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 170148 0.71 0.604784
Target:  5'- cGGcu-GCACGcgcgGCggcGCCGGCCGGGg -3'
miRNA:   3'- aCCuauCGUGUa---UGa--CGGCCGGCCCg -5'
28942 3' -57.1 NC_006146.1 + 170084 0.71 0.582604
Target:  5'- gGGAUGGCcggcgggagggGCcgGCgccgcaggggggGCCGGCgGGGCg -3'
miRNA:   3'- aCCUAUCG-----------UGuaUGa-----------CGGCCGgCCCG- -5'
28942 3' -57.1 NC_006146.1 + 169369 0.67 0.826154
Target:  5'- gGGAgagGGgGCAggGCUGgC-GCCGGGCc -3'
miRNA:   3'- aCCUa--UCgUGUa-UGACgGcCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 169217 0.71 0.604784
Target:  5'- cGGcu-GCACGcgcgGCggcGCCGGCCGGGg -3'
miRNA:   3'- aCCuauCGUGUa---UGa--CGGCCGGCCCg -5'
28942 3' -57.1 NC_006146.1 + 169167 0.73 0.486731
Target:  5'- aGGGgccGGCGCcUGCaggggggGCCGGCgGGGCg -3'
miRNA:   3'- aCCUa--UCGUGuAUGa------CGGCCGgCCCG- -5'
28942 3' -57.1 NC_006146.1 + 168437 0.67 0.826154
Target:  5'- gGGAgagGGgGCAggGCUGgC-GCCGGGCc -3'
miRNA:   3'- aCCUa--UCgUGUa-UGACgGcCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 168285 0.71 0.604784
Target:  5'- cGGcu-GCACGcgcgGCggcGCCGGCCGGGg -3'
miRNA:   3'- aCCuauCGUGUa---UGa--CGGCCGGCCCg -5'
28942 3' -57.1 NC_006146.1 + 168235 0.73 0.486731
Target:  5'- aGGGgccGGCGCcUGCaggggggGCCGGCgGGGCg -3'
miRNA:   3'- aCCUa--UCGUGuAUGa------CGGCCGgCCCG- -5'
28942 3' -57.1 NC_006146.1 + 167749 0.67 0.84256
Target:  5'- -cGAUcagGGCGCAggg-GCCGGgUGGGCg -3'
miRNA:   3'- acCUA---UCGUGUaugaCGGCCgGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 167505 0.67 0.826154
Target:  5'- gGGAgagGGgGCAggGCUGgC-GCCGGGCc -3'
miRNA:   3'- aCCUa--UCgUGUa-UGACgGcCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 167353 0.71 0.604784
Target:  5'- cGGcu-GCACGcgcgGCggcGCCGGCCGGGg -3'
miRNA:   3'- aCCuauCGUGUa---UGa--CGGCCGGCCCg -5'
28942 3' -57.1 NC_006146.1 + 167303 0.73 0.486731
Target:  5'- aGGGgccGGCGCcUGCaggggggGCCGGCgGGGCg -3'
miRNA:   3'- aCCUa--UCGUGuAUGa------CGGCCGgCCCG- -5'
28942 3' -57.1 NC_006146.1 + 166486 0.7 0.665533
Target:  5'- cGuGGUAGCuagaaucgcaGCGUGgUGCCaGUCGGGCg -3'
miRNA:   3'- aC-CUAUCG----------UGUAUgACGGcCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 165798 0.67 0.817688
Target:  5'- -cGGUGGCACg----GCCGGCUagggGGGCg -3'
miRNA:   3'- acCUAUCGUGuaugaCGGCCGG----CCCG- -5'
28942 3' -57.1 NC_006146.1 + 163237 0.66 0.88708
Target:  5'- aGGGUAGCGC-UGCU-CCaGGaaccCCGGGUu -3'
miRNA:   3'- aCCUAUCGUGuAUGAcGG-CC----GGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 162918 0.69 0.72531
Target:  5'- cUGGGUAGUAUAUGCUGUCcuaaaGuuGGGa -3'
miRNA:   3'- -ACCUAUCGUGUAUGACGGc----CggCCCg -5'
28942 3' -57.1 NC_006146.1 + 161735 0.68 0.791329
Target:  5'- gUGGGUGGCACGgugGgaGCCcGCCGuccccgaaagaGGCa -3'
miRNA:   3'- -ACCUAUCGUGUa--UgaCGGcCGGC-----------CCG- -5'
28942 3' -57.1 NC_006146.1 + 161594 0.82 0.154792
Target:  5'- cGGAUAGCAaAUGCUGcCCGGCCGG-Ca -3'
miRNA:   3'- aCCUAUCGUgUAUGAC-GGCCGGCCcG- -5'
28942 3' -57.1 NC_006146.1 + 160676 0.66 0.893755
Target:  5'- aGGGccGGCACAUGaccaggGCCGGuaGaGGCa -3'
miRNA:   3'- aCCUa-UCGUGUAUga----CGGCCggC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.