miRNA display CGI


Results 41 - 60 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28942 3' -57.1 NC_006146.1 + 167303 0.73 0.486731
Target:  5'- aGGGgccGGCGCcUGCaggggggGCCGGCgGGGCg -3'
miRNA:   3'- aCCUa--UCGUGuAUGa------CGGCCGgCCCG- -5'
28942 3' -57.1 NC_006146.1 + 48025 0.73 0.486731
Target:  5'- gGGGaGGCACGgcggGCCGGCuCGGGUc -3'
miRNA:   3'- aCCUaUCGUGUaugaCGGCCG-GCCCG- -5'
28942 3' -57.1 NC_006146.1 + 46782 0.74 0.440726
Target:  5'- cGGAUGGCug-----GCCGGCCGGcGCg -3'
miRNA:   3'- aCCUAUCGuguaugaCGGCCGGCC-CG- -5'
28942 3' -57.1 NC_006146.1 + 145711 0.75 0.414337
Target:  5'- gGGAgcaggAGCGCGUcagcuugaugucGCU-CUGGCCGGGCa -3'
miRNA:   3'- aCCUa----UCGUGUA------------UGAcGGCCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 148523 0.79 0.22999
Target:  5'- aGGGUGGagaGCAUGCUGCUGGCCacugccaugauGGGUg -3'
miRNA:   3'- aCCUAUCg--UGUAUGACGGCCGG-----------CCCG- -5'
28942 3' -57.1 NC_006146.1 + 170148 0.71 0.604784
Target:  5'- cGGcu-GCACGcgcgGCggcGCCGGCCGGGg -3'
miRNA:   3'- aCCuauCGUGUa---UGa--CGGCCGGCCCg -5'
28942 3' -57.1 NC_006146.1 + 51973 0.71 0.604784
Target:  5'- cGGggAGguCuccgGCaUGCgGGCCGGGCg -3'
miRNA:   3'- aCCuaUCguGua--UG-ACGgCCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 33276 0.69 0.705605
Target:  5'- cGGGUGGgGgGUGgc-CCGGCUGGGCa -3'
miRNA:   3'- aCCUAUCgUgUAUgacGGCCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 33152 0.69 0.705605
Target:  5'- cGGGUGGgGgGUGgc-CCGGCUGGGCa -3'
miRNA:   3'- aCCUAUCgUgUAUgacGGCCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 5221 0.69 0.705605
Target:  5'- gGGGU-GCAgGUcCuUGCCGGCCucgGGGCu -3'
miRNA:   3'- aCCUAuCGUgUAuG-ACGGCCGG---CCCG- -5'
28942 3' -57.1 NC_006146.1 + 114152 0.7 0.675612
Target:  5'- cGGAccaGGCGCA---UGCUGGCCcuGGGCa -3'
miRNA:   3'- aCCUa--UCGUGUaugACGGCCGG--CCCG- -5'
28942 3' -57.1 NC_006146.1 + 113563 0.7 0.675612
Target:  5'- cGGAaguUGGCGCuccAUGCUGaCCcucgggagaGGCCGGGUc -3'
miRNA:   3'- aCCU---AUCGUG---UAUGAC-GG---------CCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 166486 0.7 0.665533
Target:  5'- cGuGGUAGCuagaaucgcaGCGUGgUGCCaGUCGGGCg -3'
miRNA:   3'- aC-CUAUCG----------UGUAUgACGGcCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 37869 0.7 0.665533
Target:  5'- -aGAUAG-GCAUAgaGCaGGCCGGGCu -3'
miRNA:   3'- acCUAUCgUGUAUgaCGgCCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 61418 0.7 0.655427
Target:  5'- cUGcGGUGGC-CA-ACgcggGCaCGGCCGGGCu -3'
miRNA:   3'- -AC-CUAUCGuGUaUGa---CG-GCCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 45398 0.7 0.645303
Target:  5'- gGGGUugAGCACGUcggugggccagcGCgagGCCccGGCCGGGUu -3'
miRNA:   3'- aCCUA--UCGUGUA------------UGa--CGG--CCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 112174 0.71 0.635169
Target:  5'- gUGuGGUGGCAUuggugGUGCUGgUGGCCuGGGUa -3'
miRNA:   3'- -AC-CUAUCGUG-----UAUGACgGCCGG-CCCG- -5'
28942 3' -57.1 NC_006146.1 + 158866 0.71 0.635169
Target:  5'- cUGG-UGGCcgcacccgccACGUaGCUGCCGGUcuCGGGCa -3'
miRNA:   3'- -ACCuAUCG----------UGUA-UGACGGCCG--GCCCG- -5'
28942 3' -57.1 NC_006146.1 + 33235 0.71 0.614902
Target:  5'- cGGGUGGcCGCcgGCggGUCcGCCGGGCc -3'
miRNA:   3'- aCCUAUC-GUGuaUGa-CGGcCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 152231 0.71 0.614902
Target:  5'- cGuGAUAGCGuCGc-CUGCgaaGGCCGGGCa -3'
miRNA:   3'- aC-CUAUCGU-GUauGACGg--CCGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.