Results 41 - 60 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28942 | 3' | -57.1 | NC_006146.1 | + | 114152 | 0.7 | 0.675612 |
Target: 5'- cGGAccaGGCGCA---UGCUGGCCcuGGGCa -3' miRNA: 3'- aCCUa--UCGUGUaugACGGCCGG--CCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 15030 | 0.7 | 0.675612 |
Target: 5'- gGGAggGGCGCcugGCcaggGCCcGCCGGGCc -3' miRNA: 3'- aCCUa-UCGUGua-UGa---CGGcCGGCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 113563 | 0.7 | 0.675612 |
Target: 5'- cGGAaguUGGCGCuccAUGCUGaCCcucgggagaGGCCGGGUc -3' miRNA: 3'- aCCU---AUCGUG---UAUGAC-GG---------CCGGCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 145399 | 0.7 | 0.695656 |
Target: 5'- aGGA-GGCGCccGgaGCgaGGCCGGGCa -3' miRNA: 3'- aCCUaUCGUGuaUgaCGg-CCGGCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 157710 | 0.7 | 0.695656 |
Target: 5'- aGGA-GGCGCccGgaGCgaGGCCGGGCa -3' miRNA: 3'- aCCUaUCGUGuaUgaCGg-CCGGCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 148477 | 0.7 | 0.695656 |
Target: 5'- aGGA-GGCGCccGgaGCgaGGCCGGGCa -3' miRNA: 3'- aCCUaUCGUGuaUgaCGg-CCGGCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 151555 | 0.7 | 0.695656 |
Target: 5'- aGGA-GGCGCccGgaGCgaGGCCGGGCa -3' miRNA: 3'- aCCUaUCGUGuaUgaCGg-CCGGCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 154633 | 0.7 | 0.695656 |
Target: 5'- aGGA-GGCGCccGgaGCgaGGCCGGGCa -3' miRNA: 3'- aCCUaUCGUGuaUgaCGg-CCGGCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 142321 | 0.7 | 0.695656 |
Target: 5'- aGGA-GGCGCccGgaGCgaGGCCGGGCa -3' miRNA: 3'- aCCUaUCGUGuaUgaCGg-CCGGCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 5221 | 0.69 | 0.705605 |
Target: 5'- gGGGU-GCAgGUcCuUGCCGGCCucgGGGCu -3' miRNA: 3'- aCCUAuCGUgUAuG-ACGGCCGG---CCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 33152 | 0.69 | 0.705605 |
Target: 5'- cGGGUGGgGgGUGgc-CCGGCUGGGCa -3' miRNA: 3'- aCCUAUCgUgUAUgacGGCCGGCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 33276 | 0.69 | 0.705605 |
Target: 5'- cGGGUGGgGgGUGgc-CCGGCUGGGCa -3' miRNA: 3'- aCCUAUCgUgUAUgacGGCCGGCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 42439 | 0.69 | 0.715492 |
Target: 5'- cUGGGUGcGCGCcgccaGCaUGgCGGCCGGGUc -3' miRNA: 3'- -ACCUAU-CGUGua---UG-ACgGCCGGCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 116985 | 0.69 | 0.715492 |
Target: 5'- aGGAgcucaacgAGCGCGUGgaGCgGGCCcuggaccuGGGCu -3' miRNA: 3'- aCCUa-------UCGUGUAUgaCGgCCGG--------CCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 124992 | 0.69 | 0.72531 |
Target: 5'- ----cGGCACGguca-CCGGCCGGGCg -3' miRNA: 3'- accuaUCGUGUaugacGGCCGGCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 14046 | 0.69 | 0.72531 |
Target: 5'- gGGGgcaGGCGCAaGC-GCCGGCUGGcuGCg -3' miRNA: 3'- aCCUa--UCGUGUaUGaCGGCCGGCC--CG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 162918 | 0.69 | 0.72531 |
Target: 5'- cUGGGUAGUAUAUGCUGUCcuaaaGuuGGGa -3' miRNA: 3'- -ACCUAUCGUGUAUGACGGc----CggCCCg -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 122140 | 0.69 | 0.735049 |
Target: 5'- ----aAGCuGCGgcgGCUGCUggaGGCCGGGCg -3' miRNA: 3'- accuaUCG-UGUa--UGACGG---CCGGCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 22105 | 0.69 | 0.744701 |
Target: 5'- cUGGGUGGCugGgcagGCCGGgucUCGGGUc -3' miRNA: 3'- -ACCUAUCGugUaugaCGGCC---GGCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 19027 | 0.69 | 0.744701 |
Target: 5'- cUGGGUGGCugGgcagGCCGGgucUCGGGUc -3' miRNA: 3'- -ACCUAUCGugUaugaCGGCC---GGCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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