Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28942 | 5' | -49.9 | NC_006146.1 | + | 161606 | 0.7 | 0.977492 |
Target: 5'- gCUGcCCGGCcGGcAGUAUGUGCUAUCc -3' miRNA: 3'- -GAUaGGCCGcCCaUCAUGUAUGAUGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 77314 | 0.7 | 0.977492 |
Target: 5'- ---cCCGGCGGGUcGcGCAUGCccagGCUg -3' miRNA: 3'- gauaGGCCGCCCAuCaUGUAUGa---UGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 148514 | 0.69 | 0.981995 |
Target: 5'- ---cCCGGggccaGGGUGGagaGCAUGCUGCUg -3' miRNA: 3'- gauaGGCCg----CCCAUCa--UGUAUGAUGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 9735 | 0.69 | 0.985785 |
Target: 5'- --uUCUG--GGGUAGUAUAUGCUAUCa -3' miRNA: 3'- gauAGGCcgCCCAUCAUGUAUGAUGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 118343 | 0.69 | 0.985785 |
Target: 5'- ---gCCGGCGGGcgcGUgaACAU-CUACCg -3' miRNA: 3'- gauaGGCCGCCCau-CA--UGUAuGAUGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 63012 | 0.69 | 0.987435 |
Target: 5'- -aGUCUGGCGGGUGcccgACGUA--ACCu -3' miRNA: 3'- gaUAGGCCGCCCAUca--UGUAUgaUGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 163035 | 0.68 | 0.988789 |
Target: 5'- gCUAUCCuaauuuaGuuGGGUAGUGUAUACUAUCa -3' miRNA: 3'- -GAUAGG-------CcgCCCAUCAUGUAUGAUGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 137991 | 0.68 | 0.989491 |
Target: 5'- ---cCCGGCGGGguggggGGUGCGcccccagccggacccUGgUGCCa -3' miRNA: 3'- gauaGGCCGCCCa-----UCAUGU---------------AUgAUGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 168366 | 0.68 | 0.991392 |
Target: 5'- -gGUCCcggGGCGGGgGGUcgggcggGCAUGCU-CCg -3' miRNA: 3'- gaUAGG---CCGCCCaUCA-------UGUAUGAuGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 169298 | 0.68 | 0.991392 |
Target: 5'- -gGUCCcggGGCGGGgGGUcgggcggGCAUGCU-CCg -3' miRNA: 3'- gaUAGG---CCGCCCaUCA-------UGUAUGAuGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 170229 | 0.68 | 0.991392 |
Target: 5'- -gGUCCcggGGCGGGgGGUcgggcggGCAUGCU-CCg -3' miRNA: 3'- gaUAGG---CCGCCCaUCA-------UGUAUGAuGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 167434 | 0.68 | 0.991392 |
Target: 5'- -gGUCCcggGGCGGGgGGUcgggcggGCAUGCU-CCg -3' miRNA: 3'- gaUAGG---CCGCCCaUCA-------UGUAUGAuGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 43940 | 0.68 | 0.992501 |
Target: 5'- gUGUuuGaaaaggcGCGGGaUAGUGUAUGCUACCu -3' miRNA: 3'- gAUAggC-------CGCCC-AUCAUGUAUGAUGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 59433 | 0.68 | 0.992501 |
Target: 5'- gUAUgCCGGgGGGUGGUuucacugGCAcgACUggGCCg -3' miRNA: 3'- gAUA-GGCCgCCCAUCA-------UGUa-UGA--UGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 18860 | 0.68 | 0.992605 |
Target: 5'- gCUG-CCGGgGuGGUGG-ACGUGCggggGCCu -3' miRNA: 3'- -GAUaGGCCgC-CCAUCaUGUAUGa---UGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 161137 | 0.68 | 0.993586 |
Target: 5'- --uUUCGGguuccCGGGUAGgaaGUACUGCCc -3' miRNA: 3'- gauAGGCC-----GCCCAUCaugUAUGAUGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 36173 | 0.67 | 0.99446 |
Target: 5'- ---cCUGGCuGGccUGGUGCAUGCaUGCCu -3' miRNA: 3'- gauaGGCCGcCC--AUCAUGUAUG-AUGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 162796 | 0.67 | 0.995161 |
Target: 5'- gCUAUCCaGauaaguuCGGGUAGcAUAUGCUAUCc -3' miRNA: 3'- -GAUAGGcC-------GCCCAUCaUGUAUGAUGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 43003 | 0.67 | 0.995235 |
Target: 5'- ---gCCGcCGGGUgagaGGUGCGaggGCUGCCg -3' miRNA: 3'- gauaGGCcGCCCA----UCAUGUa--UGAUGG- -5' |
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28942 | 5' | -49.9 | NC_006146.1 | + | 163116 | 0.67 | 0.995919 |
Target: 5'- aCUAUCCuaGCuuucGGUAGcAUAUGCUACCc -3' miRNA: 3'- -GAUAGGc-CGc---CCAUCaUGUAUGAUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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