Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28943 | 5' | -55.2 | NC_006146.1 | + | 3353 | 0.68 | 0.878541 |
Target: 5'- uGUGAGGCA-GCGgggGGAgaaaaucaacgGCCGCGg-- -3' miRNA: 3'- -CAUUCCGUgCGCa--CCUa----------CGGCGCaac -5' |
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28943 | 5' | -55.2 | NC_006146.1 | + | 3800 | 0.67 | 0.905331 |
Target: 5'- -gGGGGCACGCGggGGAUGgCCaCGc-- -3' miRNA: 3'- caUUCCGUGCGCa-CCUAC-GGcGCaac -5' |
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28943 | 5' | -55.2 | NC_006146.1 | + | 9633 | 1.09 | 0.003712 |
Target: 5'- uGUAAGGCACGCGUGGAUGCCGCGUUGg -3' miRNA: 3'- -CAUUCCGUGCGCACCUACGGCGCAAC- -5' |
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28943 | 5' | -55.2 | NC_006146.1 | + | 11639 | 0.66 | 0.943097 |
Target: 5'- -cGAGGCcCGCGUG---GCgGCGUUGc -3' miRNA: 3'- caUUCCGuGCGCACcuaCGgCGCAAC- -5' |
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28943 | 5' | -55.2 | NC_006146.1 | + | 13314 | 0.68 | 0.87128 |
Target: 5'- cGUGcuGGGCACcaggGCgGUGGAgucgGCCGCGg-- -3' miRNA: 3'- -CAU--UCCGUG----CG-CACCUa---CGGCGCaac -5' |
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28943 | 5' | -55.2 | NC_006146.1 | + | 32769 | 0.66 | 0.928353 |
Target: 5'- -gAAGGCGCGCuGgccgGGGUcGCCaGCGUc- -3' miRNA: 3'- caUUCCGUGCG-Ca---CCUA-CGG-CGCAac -5' |
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28943 | 5' | -55.2 | NC_006146.1 | + | 40687 | 0.66 | 0.928353 |
Target: 5'- cUGAGGCGCGCuGUccuucguccuuuGGAUGUCGgggaCGUUGc -3' miRNA: 3'- cAUUCCGUGCG-CA------------CCUACGGC----GCAAC- -5' |
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28943 | 5' | -55.2 | NC_006146.1 | + | 48228 | 0.67 | 0.89898 |
Target: 5'- ---uGGCGCGCcUGGGUgagcGCCGCGcgGa -3' miRNA: 3'- cauuCCGUGCGcACCUA----CGGCGCaaC- -5' |
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28943 | 5' | -55.2 | NC_006146.1 | + | 50854 | 0.66 | 0.928353 |
Target: 5'- --cAGGCugGUGggGGAUGagagGCGUUGg -3' miRNA: 3'- cauUCCGugCGCa-CCUACgg--CGCAAC- -5' |
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28943 | 5' | -55.2 | NC_006146.1 | + | 53522 | 0.69 | 0.814748 |
Target: 5'- --cGGGcCGCGCGUGuGAagGCCGCGa-- -3' miRNA: 3'- cauUCC-GUGCGCAC-CUa-CGGCGCaac -5' |
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28943 | 5' | -55.2 | NC_006146.1 | + | 69723 | 0.77 | 0.397893 |
Target: 5'- -aGGGGCGCaGCGUGGAguuguaGCgGCGUUGg -3' miRNA: 3'- caUUCCGUG-CGCACCUa-----CGgCGCAAC- -5' |
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28943 | 5' | -55.2 | NC_006146.1 | + | 73366 | 0.68 | 0.856114 |
Target: 5'- --uAGGCAC-CGaagGGGUGCgGUGUUGg -3' miRNA: 3'- cauUCCGUGcGCa--CCUACGgCGCAAC- -5' |
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28943 | 5' | -55.2 | NC_006146.1 | + | 73824 | 0.68 | 0.87128 |
Target: 5'- -cAAGGCACGCGUGuGAuuUGuuGCc--- -3' miRNA: 3'- caUUCCGUGCGCAC-CU--ACggCGcaac -5' |
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28943 | 5' | -55.2 | NC_006146.1 | + | 75251 | 0.67 | 0.89898 |
Target: 5'- -cGAGGCGgGCGUGGgGUGCaCGgGg-- -3' miRNA: 3'- caUUCCGUgCGCACC-UACG-GCgCaac -5' |
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28943 | 5' | -55.2 | NC_006146.1 | + | 94377 | 0.66 | 0.933508 |
Target: 5'- -cGAGGCGCGCGUaguucuucuGGAgccagguguggGCCGUGa-- -3' miRNA: 3'- caUUCCGUGCGCA---------CCUa----------CGGCGCaac -5' |
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28943 | 5' | -55.2 | NC_006146.1 | + | 110887 | 0.73 | 0.608537 |
Target: 5'- --cGGGCGCagGCGgGGAcgggGCCGCGUUGg -3' miRNA: 3'- cauUCCGUG--CGCaCCUa---CGGCGCAAC- -5' |
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28943 | 5' | -55.2 | NC_006146.1 | + | 113744 | 0.67 | 0.905331 |
Target: 5'- gGUGAGGaAgGCGUGGAaGCgGCGg-- -3' miRNA: 3'- -CAUUCCgUgCGCACCUaCGgCGCaac -5' |
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28943 | 5' | -55.2 | NC_006146.1 | + | 120512 | 0.71 | 0.740352 |
Target: 5'- -cGAGGaCGCgagccGCGUGGAUGCgGCGgcGg -3' miRNA: 3'- caUUCC-GUG-----CGCACCUACGgCGCaaC- -5' |
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28943 | 5' | -55.2 | NC_006146.1 | + | 123161 | 0.66 | 0.928353 |
Target: 5'- -cAGGGCGCGCGaGGAgGCCcCGg-- -3' miRNA: 3'- caUUCCGUGCGCaCCUaCGGcGCaac -5' |
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28943 | 5' | -55.2 | NC_006146.1 | + | 136599 | 0.66 | 0.928353 |
Target: 5'- -gAAGGCGCGCuGgccgGGGUcGCCaGCGUc- -3' miRNA: 3'- caUUCCGUGCG-Ca---CCUA-CGG-CGCAac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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