miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28943 5' -55.2 NC_006146.1 + 50854 0.66 0.928353
Target:  5'- --cAGGCugGUGggGGAUGagagGCGUUGg -3'
miRNA:   3'- cauUCCGugCGCa-CCUACgg--CGCAAC- -5'
28943 5' -55.2 NC_006146.1 + 73366 0.68 0.856114
Target:  5'- --uAGGCAC-CGaagGGGUGCgGUGUUGg -3'
miRNA:   3'- cauUCCGUGcGCa--CCUACGgCGCAAC- -5'
28943 5' -55.2 NC_006146.1 + 73824 0.68 0.87128
Target:  5'- -cAAGGCACGCGUGuGAuuUGuuGCc--- -3'
miRNA:   3'- caUUCCGUGCGCAC-CU--ACggCGcaac -5'
28943 5' -55.2 NC_006146.1 + 3353 0.68 0.878541
Target:  5'- uGUGAGGCA-GCGgggGGAgaaaaucaacgGCCGCGg-- -3'
miRNA:   3'- -CAUUCCGUgCGCa--CCUa----------CGGCGCaac -5'
28943 5' -55.2 NC_006146.1 + 156242 0.67 0.885581
Target:  5'- ---cGGC-CGUGgacgGGGUGCCGUGgUUGg -3'
miRNA:   3'- cauuCCGuGCGCa---CCUACGGCGC-AAC- -5'
28943 5' -55.2 NC_006146.1 + 48228 0.67 0.89898
Target:  5'- ---uGGCGCGCcUGGGUgagcGCCGCGcgGa -3'
miRNA:   3'- cauuCCGUGCGcACCUA----CGGCGCaaC- -5'
28943 5' -55.2 NC_006146.1 + 167808 0.67 0.905331
Target:  5'- uGgcGGGCGCGCGUGGc--CCGCc--- -3'
miRNA:   3'- -CauUCCGUGCGCACCuacGGCGcaac -5'
28943 5' -55.2 NC_006146.1 + 168740 0.67 0.905331
Target:  5'- uGgcGGGCGCGCGUGGc--CCGCc--- -3'
miRNA:   3'- -CauUCCGUGCGCACCuacGGCGcaac -5'
28943 5' -55.2 NC_006146.1 + 169672 0.67 0.905331
Target:  5'- uGgcGGGCGCGCGUGGc--CCGCc--- -3'
miRNA:   3'- -CauUCCGUGCGCACCuacGGCGcaac -5'
28943 5' -55.2 NC_006146.1 + 53522 0.69 0.814748
Target:  5'- --cGGGcCGCGCGUGuGAagGCCGCGa-- -3'
miRNA:   3'- cauUCC-GUGCGCAC-CUa-CGGCGCaac -5'
28943 5' -55.2 NC_006146.1 + 170070 0.71 0.720617
Target:  5'- -cGGGGcCGCGCGUGGGgaugGCCgGCGg-- -3'
miRNA:   3'- caUUCC-GUGCGCACCUa---CGG-CGCaac -5'
28943 5' -55.2 NC_006146.1 + 169138 0.71 0.720617
Target:  5'- -cGGGGcCGCGCGUGGGgaugGCCgGCGg-- -3'
miRNA:   3'- caUUCC-GUGCGCACCUa---CGG-CGCaac -5'
28943 5' -55.2 NC_006146.1 + 69723 0.77 0.397893
Target:  5'- -aGGGGCGCaGCGUGGAguuguaGCgGCGUUGg -3'
miRNA:   3'- caUUCCGUG-CGCACCUa-----CGgCGCAAC- -5'
28943 5' -55.2 NC_006146.1 + 145566 0.73 0.588073
Target:  5'- --cGGGaACGUGUGGAUGCgCGCGUa- -3'
miRNA:   3'- cauUCCgUGCGCACCUACG-GCGCAac -5'
28943 5' -55.2 NC_006146.1 + 167555 0.72 0.676226
Target:  5'- -gGAGGcCACGUGUGGAggcccgcggagagGCCGUGUg- -3'
miRNA:   3'- caUUCC-GUGCGCACCUa------------CGGCGCAac -5'
28943 5' -55.2 NC_006146.1 + 168487 0.72 0.676226
Target:  5'- -gGAGGcCACGUGUGGAggcccgcggagagGCCGUGUg- -3'
miRNA:   3'- caUUCC-GUGCGCACCUa------------CGGCGCAac -5'
28943 5' -55.2 NC_006146.1 + 169419 0.72 0.676226
Target:  5'- -gGAGGcCACGUGUGGAggcccgcggagagGCCGUGUg- -3'
miRNA:   3'- caUUCC-GUGCGCACCUa------------CGGCGCAac -5'
28943 5' -55.2 NC_006146.1 + 170350 0.72 0.676226
Target:  5'- -gGAGGcCACGUGUGGAggcccgcggagagGCCGUGUg- -3'
miRNA:   3'- caUUCC-GUGCGCACCUa------------CGGCGCAac -5'
28943 5' -55.2 NC_006146.1 + 167274 0.71 0.720617
Target:  5'- -cGGGGcCGCGCGUGGGgaugGCCgGCGg-- -3'
miRNA:   3'- caUUCC-GUGCGCACCUa---CGG-CGCaac -5'
28943 5' -55.2 NC_006146.1 + 168206 0.71 0.720617
Target:  5'- -cGGGGcCGCGCGUGGGgaugGCCgGCGg-- -3'
miRNA:   3'- caUUCC-GUGCGCACCUa---CGG-CGCaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.