miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28943 5' -55.2 NC_006146.1 + 3353 0.68 0.878541
Target:  5'- uGUGAGGCA-GCGgggGGAgaaaaucaacgGCCGCGg-- -3'
miRNA:   3'- -CAUUCCGUgCGCa--CCUa----------CGGCGCaac -5'
28943 5' -55.2 NC_006146.1 + 3800 0.67 0.905331
Target:  5'- -gGGGGCACGCGggGGAUGgCCaCGc-- -3'
miRNA:   3'- caUUCCGUGCGCa-CCUAC-GGcGCaac -5'
28943 5' -55.2 NC_006146.1 + 9633 1.09 0.003712
Target:  5'- uGUAAGGCACGCGUGGAUGCCGCGUUGg -3'
miRNA:   3'- -CAUUCCGUGCGCACCUACGGCGCAAC- -5'
28943 5' -55.2 NC_006146.1 + 11639 0.66 0.943097
Target:  5'- -cGAGGCcCGCGUG---GCgGCGUUGc -3'
miRNA:   3'- caUUCCGuGCGCACcuaCGgCGCAAC- -5'
28943 5' -55.2 NC_006146.1 + 13314 0.68 0.87128
Target:  5'- cGUGcuGGGCACcaggGCgGUGGAgucgGCCGCGg-- -3'
miRNA:   3'- -CAU--UCCGUG----CG-CACCUa---CGGCGCaac -5'
28943 5' -55.2 NC_006146.1 + 32769 0.66 0.928353
Target:  5'- -gAAGGCGCGCuGgccgGGGUcGCCaGCGUc- -3'
miRNA:   3'- caUUCCGUGCG-Ca---CCUA-CGG-CGCAac -5'
28943 5' -55.2 NC_006146.1 + 40687 0.66 0.928353
Target:  5'- cUGAGGCGCGCuGUccuucguccuuuGGAUGUCGgggaCGUUGc -3'
miRNA:   3'- cAUUCCGUGCG-CA------------CCUACGGC----GCAAC- -5'
28943 5' -55.2 NC_006146.1 + 48228 0.67 0.89898
Target:  5'- ---uGGCGCGCcUGGGUgagcGCCGCGcgGa -3'
miRNA:   3'- cauuCCGUGCGcACCUA----CGGCGCaaC- -5'
28943 5' -55.2 NC_006146.1 + 50854 0.66 0.928353
Target:  5'- --cAGGCugGUGggGGAUGagagGCGUUGg -3'
miRNA:   3'- cauUCCGugCGCa-CCUACgg--CGCAAC- -5'
28943 5' -55.2 NC_006146.1 + 53522 0.69 0.814748
Target:  5'- --cGGGcCGCGCGUGuGAagGCCGCGa-- -3'
miRNA:   3'- cauUCC-GUGCGCAC-CUa-CGGCGCaac -5'
28943 5' -55.2 NC_006146.1 + 69723 0.77 0.397893
Target:  5'- -aGGGGCGCaGCGUGGAguuguaGCgGCGUUGg -3'
miRNA:   3'- caUUCCGUG-CGCACCUa-----CGgCGCAAC- -5'
28943 5' -55.2 NC_006146.1 + 73366 0.68 0.856114
Target:  5'- --uAGGCAC-CGaagGGGUGCgGUGUUGg -3'
miRNA:   3'- cauUCCGUGcGCa--CCUACGgCGCAAC- -5'
28943 5' -55.2 NC_006146.1 + 73824 0.68 0.87128
Target:  5'- -cAAGGCACGCGUGuGAuuUGuuGCc--- -3'
miRNA:   3'- caUUCCGUGCGCAC-CU--ACggCGcaac -5'
28943 5' -55.2 NC_006146.1 + 75251 0.67 0.89898
Target:  5'- -cGAGGCGgGCGUGGgGUGCaCGgGg-- -3'
miRNA:   3'- caUUCCGUgCGCACC-UACG-GCgCaac -5'
28943 5' -55.2 NC_006146.1 + 94377 0.66 0.933508
Target:  5'- -cGAGGCGCGCGUaguucuucuGGAgccagguguggGCCGUGa-- -3'
miRNA:   3'- caUUCCGUGCGCA---------CCUa----------CGGCGCaac -5'
28943 5' -55.2 NC_006146.1 + 110887 0.73 0.608537
Target:  5'- --cGGGCGCagGCGgGGAcgggGCCGCGUUGg -3'
miRNA:   3'- cauUCCGUG--CGCaCCUa---CGGCGCAAC- -5'
28943 5' -55.2 NC_006146.1 + 113744 0.67 0.905331
Target:  5'- gGUGAGGaAgGCGUGGAaGCgGCGg-- -3'
miRNA:   3'- -CAUUCCgUgCGCACCUaCGgCGCaac -5'
28943 5' -55.2 NC_006146.1 + 120512 0.71 0.740352
Target:  5'- -cGAGGaCGCgagccGCGUGGAUGCgGCGgcGg -3'
miRNA:   3'- caUUCC-GUG-----CGCACCUACGgCGCaaC- -5'
28943 5' -55.2 NC_006146.1 + 123161 0.66 0.928353
Target:  5'- -cAGGGCGCGCGaGGAgGCCcCGg-- -3'
miRNA:   3'- caUUCCGUGCGCaCCUaCGGcGCaac -5'
28943 5' -55.2 NC_006146.1 + 136599 0.66 0.928353
Target:  5'- -gAAGGCGCGCuGgccgGGGUcGCCaGCGUc- -3'
miRNA:   3'- caUUCCGUGCG-Ca---CCUA-CGG-CGCAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.