miRNA display CGI


Results 41 - 60 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28944 3' -61.9 NC_006146.1 + 98298 0.69 0.481155
Target:  5'- cGGUGGGGcugAGGGCGUGCuccgugGCCGuCUGGCa -3'
miRNA:   3'- -UCACCCC---UCCCGUGUG------CGGUcGACCG- -5'
28944 3' -61.9 NC_006146.1 + 138061 0.69 0.484806
Target:  5'- -aUGGGGGGGGaggccgccgcaaggACGCcggGCCGGCUGGg -3'
miRNA:   3'- ucACCCCUCCCg-------------UGUG---CGGUCGACCg -5'
28944 3' -61.9 NC_006146.1 + 34231 0.69 0.484806
Target:  5'- -aUGGGGGGGGaggccgccgcaaggACGCcggGCCGGCUGGg -3'
miRNA:   3'- ucACCCCUCCCg-------------UGUG---CGGUCGACCg -5'
28944 3' -61.9 NC_006146.1 + 162627 0.69 0.484806
Target:  5'- gAGUGGGGcucccagagagaacgGGGGUGCAUGCCcccucGUaGGCa -3'
miRNA:   3'- -UCACCCC---------------UCCCGUGUGCGGu----CGaCCG- -5'
28944 3' -61.9 NC_006146.1 + 57360 0.69 0.490306
Target:  5'- cGGUGaGGGAGgcugcGGCGgugGCGCCggugGGCUGGCc -3'
miRNA:   3'- -UCAC-CCCUC-----CCGUg--UGCGG----UCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 71961 0.69 0.490306
Target:  5'- aGGUGGGGcuggugacauuaGGGGauguCAUaCCAGUUGGCg -3'
miRNA:   3'- -UCACCCC------------UCCCgu--GUGcGGUCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 34168 0.69 0.490306
Target:  5'- gGGUGGGGGGuGCGCccccaGCCGGaccCUGGUg -3'
miRNA:   3'- -UCACCCCUCcCGUGug---CGGUC---GACCG- -5'
28944 3' -61.9 NC_006146.1 + 44397 0.69 0.490306
Target:  5'- uGUGGGGccGGGCACGgCGCCuuccucgaggGGCucccggggucUGGCa -3'
miRNA:   3'- uCACCCCu-CCCGUGU-GCGG----------UCG----------ACCG- -5'
28944 3' -61.9 NC_006146.1 + 137998 0.69 0.490306
Target:  5'- gGGUGGGGGGuGCGCccccaGCCGGaccCUGGUg -3'
miRNA:   3'- -UCACCCCUCcCGUGug---CGGUC---GACCG- -5'
28944 3' -61.9 NC_006146.1 + 54025 0.69 0.498611
Target:  5'- aGGUGGcgccuccGGAGGGCGgcCAUGUCGGCggUGGUc -3'
miRNA:   3'- -UCACC-------CCUCCCGU--GUGCGGUCG--ACCG- -5'
28944 3' -61.9 NC_006146.1 + 61832 0.69 0.499538
Target:  5'- uGGUGGGGgcaguGGGGCugGUGCCGGgacucccggGGCa -3'
miRNA:   3'- -UCACCCC-----UCCCGugUGCGGUCga-------CCG- -5'
28944 3' -61.9 NC_006146.1 + 34010 0.68 0.508845
Target:  5'- aAGgcagGGGGGGGGUcgggGCAgGCgGGCgUGGUc -3'
miRNA:   3'- -UCa---CCCCUCCCG----UGUgCGgUCG-ACCG- -5'
28944 3' -61.9 NC_006146.1 + 65452 0.68 0.508845
Target:  5'- --aGGaGGuGGGCACGa-CCAcGCUGGCg -3'
miRNA:   3'- ucaCC-CCuCCCGUGUgcGGU-CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 32810 0.68 0.518225
Target:  5'- --cGGGGGGuGCACAacccccaGCCGGCccGGCg -3'
miRNA:   3'- ucaCCCCUCcCGUGUg------CGGUCGa-CCG- -5'
28944 3' -61.9 NC_006146.1 + 56851 0.68 0.518225
Target:  5'- cGGcGGGGGcGGCAgcuUugGCUggGGCUGGCg -3'
miRNA:   3'- -UCaCCCCUcCCGU---GugCGG--UCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 45559 0.68 0.518225
Target:  5'- --aGGGGAGGGaagACACGUCcGCcgaaguuuUGGCa -3'
miRNA:   3'- ucaCCCCUCCCg--UGUGCGGuCG--------ACCG- -5'
28944 3' -61.9 NC_006146.1 + 136640 0.68 0.518225
Target:  5'- --cGGGGGGuGCACAacccccaGCCGGCccGGCg -3'
miRNA:   3'- ucaCCCCUCcCGUGUg------CGGUCGa-CCG- -5'
28944 3' -61.9 NC_006146.1 + 89941 0.68 0.526726
Target:  5'- gGGUGGGGugguGGGUACAgguggauUGUCAGaugggcCUGGCu -3'
miRNA:   3'- -UCACCCCu---CCCGUGU-------GCGGUC------GACCG- -5'
28944 3' -61.9 NC_006146.1 + 38411 0.68 0.527673
Target:  5'- gGGUGGuGGcaucuGGGauuaGCGgGCCucuGCUGGCa -3'
miRNA:   3'- -UCACC-CCu----CCCg---UGUgCGGu--CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 85577 0.68 0.527673
Target:  5'- cGUGGGGuggcaGGaGGCAgcCGCCcgccucggaAGCUGGCa -3'
miRNA:   3'- uCACCCC-----UC-CCGUguGCGG---------UCGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.