miRNA display CGI


Results 41 - 60 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28944 3' -61.9 NC_006146.1 + 97974 0.67 0.614933
Target:  5'- --cGGGGAagaugGGGCgGCugGCCAGCUc-- -3'
miRNA:   3'- ucaCCCCU-----CCCG-UGugCGGUCGAccg -5'
28944 3' -61.9 NC_006146.1 + 45526 0.67 0.61395
Target:  5'- cGGUGGGGGccugggccuccuuGGGC-UugGCCGccCUGGCc -3'
miRNA:   3'- -UCACCCCU-------------CCCGuGugCGGUc-GACCG- -5'
28944 3' -61.9 NC_006146.1 + 96825 0.67 0.605107
Target:  5'- uGGUGGGGAcGGGCGgGCa--GGUUGGg -3'
miRNA:   3'- -UCACCCCU-CCCGUgUGcggUCGACCg -5'
28944 3' -61.9 NC_006146.1 + 124150 0.67 0.605107
Target:  5'- gGGUcGGGAGGcGaggaccCugGCCAGCgUGGCc -3'
miRNA:   3'- -UCAcCCCUCC-Cgu----GugCGGUCG-ACCG- -5'
28944 3' -61.9 NC_006146.1 + 160114 0.67 0.599219
Target:  5'- uAGUGGaGGAuagagugaauGGGCggcggacuuuggcagGCugGCCuuuaaggccAGCUGGCg -3'
miRNA:   3'- -UCACC-CCU----------CCCG---------------UGugCGG---------UCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 44184 0.67 0.595299
Target:  5'- ---aGGGAGaGGCACGCGCggcugcacugCAGCcgggGGCg -3'
miRNA:   3'- ucacCCCUC-CCGUGUGCG----------GUCGa---CCG- -5'
28944 3' -61.9 NC_006146.1 + 148516 0.67 0.585516
Target:  5'- --cGGGGccAGGGUggagaGCAUGCU-GCUGGCc -3'
miRNA:   3'- ucaCCCC--UCCCG-----UGUGCGGuCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 112049 0.67 0.582587
Target:  5'- aGGUGGGGuGGGCA---GCuCAGCggugguuucuucggUGGCg -3'
miRNA:   3'- -UCACCCCuCCCGUgugCG-GUCG--------------ACCG- -5'
28944 3' -61.9 NC_006146.1 + 2786 0.67 0.581611
Target:  5'- ---cGGGAccccGGGCGCGCGCCGGCcucccgucccgaaGGCc -3'
miRNA:   3'- ucacCCCU----CCCGUGUGCGGUCGa------------CCG- -5'
28944 3' -61.9 NC_006146.1 + 3718 0.67 0.581611
Target:  5'- ---cGGGAccccGGGCGCGCGCCGGCcucccgucccgaaGGCc -3'
miRNA:   3'- ucacCCCU----CCCGUGUGCGGUCGa------------CCG- -5'
28944 3' -61.9 NC_006146.1 + 922 0.67 0.581611
Target:  5'- ---cGGGAccccGGGCGCGCGCCGGCcucccgucccgaaGGCc -3'
miRNA:   3'- ucacCCCU----CCCGUGUGCGGUCGa------------CCG- -5'
28944 3' -61.9 NC_006146.1 + 1854 0.67 0.581611
Target:  5'- ---cGGGAccccGGGCGCGCGCCGGCcucccgucccgaaGGCc -3'
miRNA:   3'- ucacCCCU----CCCGUGUGCGGUCGa------------CCG- -5'
28944 3' -61.9 NC_006146.1 + 44312 0.67 0.575764
Target:  5'- uAGUGGGGgcuGGGGC-CGUGgCAGCcgggGGCu -3'
miRNA:   3'- -UCACCCC---UCCCGuGUGCgGUCGa---CCG- -5'
28944 3' -61.9 NC_006146.1 + 68030 0.67 0.575764
Target:  5'- -cUGGGGcccGGC-CACGaCCAGgUGGCg -3'
miRNA:   3'- ucACCCCuc-CCGuGUGC-GGUCgACCG- -5'
28944 3' -61.9 NC_006146.1 + 114351 0.67 0.575764
Target:  5'- aGGUGGacGGGGGCcuggcccgcgugACGCGUCAGCUgcugauggccGGCg -3'
miRNA:   3'- -UCACCc-CUCCCG------------UGUGCGGUCGA----------CCG- -5'
28944 3' -61.9 NC_006146.1 + 65016 0.67 0.574791
Target:  5'- -uUGGGaaGGGGGCGCugGCC-GCUaucuugccuccccGGCu -3'
miRNA:   3'- ucACCC--CUCCCGUGugCGGuCGA-------------CCG- -5'
28944 3' -61.9 NC_006146.1 + 141453 0.68 0.56605
Target:  5'- gAGUGGccagggaggacGGAGGGC-CugGCCuGCgGGg -3'
miRNA:   3'- -UCACC-----------CCUCCCGuGugCGGuCGaCCg -5'
28944 3' -61.9 NC_006146.1 + 26646 0.68 0.56605
Target:  5'- aAGUaGGGAcucaGGCcauGCGCGcCCAGUUGGCg -3'
miRNA:   3'- -UCAcCCCUc---CCG---UGUGC-GGUCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 23568 0.68 0.56605
Target:  5'- aAGUaGGGAcucaGGCcauGCGCGcCCAGUUGGCg -3'
miRNA:   3'- -UCAcCCCUc---CCG---UGUGC-GGUCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 17412 0.68 0.56605
Target:  5'- aAGUaGGGAcucaGGCcauGCGCGcCCAGUUGGCg -3'
miRNA:   3'- -UCAcCCCUc---CCG---UGUGC-GGUCGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.