miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28944 3' -61.9 NC_006146.1 + 123359 0.66 0.65429
Target:  5'- --cGaGGGAGcucuGGCGCugGCCGGgggccccgcaacCUGGCu -3'
miRNA:   3'- ucaC-CCCUC----CCGUGugCGGUC------------GACCG- -5'
28944 3' -61.9 NC_006146.1 + 76394 0.66 0.65429
Target:  5'- --gGGGGAGGGaccggGgGCGCCgacGGC-GGCg -3'
miRNA:   3'- ucaCCCCUCCCg----UgUGCGG---UCGaCCG- -5'
28944 3' -61.9 NC_006146.1 + 118059 0.66 0.65429
Target:  5'- --cGGGcGGGGGCG-GCGgCGGCUcGGCc -3'
miRNA:   3'- ucaCCC-CUCCCGUgUGCgGUCGA-CCG- -5'
28944 3' -61.9 NC_006146.1 + 14207 0.66 0.653307
Target:  5'- --cGGGGAGGcgguggcGCGCaACGCgGGCcuucUGGCc -3'
miRNA:   3'- ucaCCCCUCC-------CGUG-UGCGgUCG----ACCG- -5'
28944 3' -61.9 NC_006146.1 + 51570 0.66 0.651341
Target:  5'- gGGUGGGGAGgcGGCGCG-GCCgaaggggggacugaGGCcGGUu -3'
miRNA:   3'- -UCACCCCUC--CCGUGUgCGG--------------UCGaCCG- -5'
28944 3' -61.9 NC_006146.1 + 121331 0.66 0.648392
Target:  5'- -cUGGaGGAcaucgaggccaugcuGGGC-CugGCCGGCgUGGCc -3'
miRNA:   3'- ucACC-CCU---------------CCCGuGugCGGUCG-ACCG- -5'
28944 3' -61.9 NC_006146.1 + 48334 0.66 0.644457
Target:  5'- cGGUGGuGGGccaGGCGuccaguCugGCCAGCgGGCc -3'
miRNA:   3'- -UCACC-CCUc--CCGU------GugCGGUCGaCCG- -5'
28944 3' -61.9 NC_006146.1 + 92251 0.66 0.644457
Target:  5'- uGUGGcugcugcuGGGGGGCGgGC-CCGGCcuggGGCu -3'
miRNA:   3'- uCACC--------CCUCCCGUgUGcGGUCGa---CCG- -5'
28944 3' -61.9 NC_006146.1 + 168662 0.66 0.638552
Target:  5'- cGGUGGGGccugagGGGGCGCGgcgauugucgcCGCCcucccucugcucccGUUGGCg -3'
miRNA:   3'- -UCACCCC------UCCCGUGU-----------GCGGu-------------CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 114961 0.66 0.634615
Target:  5'- -aUGGcGGGGGGCACGCaGC-AGCccacGGCc -3'
miRNA:   3'- ucACC-CCUCCCGUGUG-CGgUCGa---CCG- -5'
28944 3' -61.9 NC_006146.1 + 106797 0.66 0.634615
Target:  5'- aAG-GGGGA-GGCACGCGagaauUCAGCcacacUGGCa -3'
miRNA:   3'- -UCaCCCCUcCCGUGUGC-----GGUCG-----ACCG- -5'
28944 3' -61.9 NC_006146.1 + 62454 0.66 0.634615
Target:  5'- uAGUGGaccuugguacGGAcGGGCACuGCGuCCAcCUGGCc -3'
miRNA:   3'- -UCACC----------CCU-CCCGUG-UGC-GGUcGACCG- -5'
28944 3' -61.9 NC_006146.1 + 169595 0.67 0.628709
Target:  5'- gGGUGGGGccugagGGGGCGCGgcgauugucgcCGCCcucccucugcucccGUUGGCg -3'
miRNA:   3'- -UCACCCC------UCCCGUGU-----------GCGGu-------------CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 167730 0.67 0.628709
Target:  5'- gGGUGGGGccugagGGGGCGCGgcgauugucgcCGCCcucccucugcucccGUUGGCg -3'
miRNA:   3'- -UCACCCC------UCCCGUGU-----------GCGGu-------------CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 3379 0.67 0.624772
Target:  5'- --aGGGGccgGGGGCGCggcccgGCGCCAGCccuGCc -3'
miRNA:   3'- ucaCCCC---UCCCGUG------UGCGGUCGac-CG- -5'
28944 3' -61.9 NC_006146.1 + 584 0.67 0.624772
Target:  5'- --aGGGGccgGGGGCGCggcccgGCGCCAGCccuGCc -3'
miRNA:   3'- ucaCCCC---UCCCGUG------UGCGGUCGac-CG- -5'
28944 3' -61.9 NC_006146.1 + 1515 0.67 0.624772
Target:  5'- --aGGGGccgGGGGCGCggcccgGCGCCAGCccuGCc -3'
miRNA:   3'- ucaCCCC---UCCCGUG------UGCGGUCGac-CG- -5'
28944 3' -61.9 NC_006146.1 + 2447 0.67 0.624772
Target:  5'- --aGGGGccgGGGGCGCggcccgGCGCCAGCccuGCc -3'
miRNA:   3'- ucaCCCC---UCCCGUG------UGCGGUCGac-CG- -5'
28944 3' -61.9 NC_006146.1 + 64653 0.67 0.624772
Target:  5'- --cGGGGccaGGGGCACGuCGCCguGGUaGGUg -3'
miRNA:   3'- ucaCCCC---UCCCGUGU-GCGG--UCGaCCG- -5'
28944 3' -61.9 NC_006146.1 + 96118 0.67 0.623787
Target:  5'- gAGUGGGGGuucuGGuGCACacucuuuccuGCGUCuuggccccccggaGGCUGGCu -3'
miRNA:   3'- -UCACCCCU----CC-CGUG----------UGCGG-------------UCGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.