miRNA display CGI


Results 41 - 60 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28944 3' -61.9 NC_006146.1 + 44184 0.67 0.595299
Target:  5'- ---aGGGAGaGGCACGCGCggcugcacugCAGCcgggGGCg -3'
miRNA:   3'- ucacCCCUC-CCGUGUGCG----------GUCGa---CCG- -5'
28944 3' -61.9 NC_006146.1 + 44312 0.67 0.575764
Target:  5'- uAGUGGGGgcuGGGGC-CGUGgCAGCcgggGGCu -3'
miRNA:   3'- -UCACCCC---UCCCGuGUGCgGUCGa---CCG- -5'
28944 3' -61.9 NC_006146.1 + 44397 0.69 0.490306
Target:  5'- uGUGGGGccGGGCACGgCGCCuuccucgaggGGCucccggggucUGGCa -3'
miRNA:   3'- uCACCCCu-CCCGUGU-GCGG----------UCG----------ACCG- -5'
28944 3' -61.9 NC_006146.1 + 45526 0.67 0.61395
Target:  5'- cGGUGGGGGccugggccuccuuGGGC-UugGCCGccCUGGCc -3'
miRNA:   3'- -UCACCCCU-------------CCCGuGugCGGUc-GACCG- -5'
28944 3' -61.9 NC_006146.1 + 45559 0.68 0.518225
Target:  5'- --aGGGGAGGGaagACACGUCcGCcgaaguuuUGGCa -3'
miRNA:   3'- ucaCCCCUCCCg--UGUGCGGuCG--------ACCG- -5'
28944 3' -61.9 NC_006146.1 + 48334 0.66 0.644457
Target:  5'- cGGUGGuGGGccaGGCGuccaguCugGCCAGCgGGCc -3'
miRNA:   3'- -UCACC-CCUc--CCGU------GugCGGUCGaCCG- -5'
28944 3' -61.9 NC_006146.1 + 49544 0.69 0.463107
Target:  5'- -cUGGGGgcGGaGGC-CACGCCGGCcaGGCc -3'
miRNA:   3'- ucACCCC--UC-CCGuGUGCGGUCGa-CCG- -5'
28944 3' -61.9 NC_006146.1 + 51174 0.66 0.68366
Target:  5'- uGUGGGuGuggaaGGGGguC-UGCgGGCUGGCg -3'
miRNA:   3'- uCACCC-C-----UCCCguGuGCGgUCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 51570 0.66 0.651341
Target:  5'- gGGUGGGGAGgcGGCGCG-GCCgaaggggggacugaGGCcGGUu -3'
miRNA:   3'- -UCACCCCUC--CCGUGUgCGG--------------UCGaCCG- -5'
28944 3' -61.9 NC_006146.1 + 51888 0.72 0.312072
Target:  5'- --aGGGGAGGGUggagGCuGCGUCGGCgggGGCc -3'
miRNA:   3'- ucaCCCCUCCCG----UG-UGCGGUCGa--CCG- -5'
28944 3' -61.9 NC_006146.1 + 54025 0.69 0.498611
Target:  5'- aGGUGGcgccuccGGAGGGCGgcCAUGUCGGCggUGGUc -3'
miRNA:   3'- -UCACC-------CCUCCCGU--GUGCGGUCG--ACCG- -5'
28944 3' -61.9 NC_006146.1 + 56851 0.68 0.518225
Target:  5'- cGGcGGGGGcGGCAgcuUugGCUggGGCUGGCg -3'
miRNA:   3'- -UCaCCCCUcCCGU---GugCGG--UCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 57360 0.69 0.490306
Target:  5'- cGGUGaGGGAGgcugcGGCGgugGCGCCggugGGCUGGCc -3'
miRNA:   3'- -UCAC-CCCUC-----CCGUg--UGCGG----UCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 57921 0.68 0.545795
Target:  5'- -aUGcaGAGGGCGCugGCCGGCgccgccaUGGUg -3'
miRNA:   3'- ucACccCUCCCGUGugCGGUCG-------ACCG- -5'
28944 3' -61.9 NC_006146.1 + 61675 0.66 0.664106
Target:  5'- aGGUGGagagaGGGGGGCACGgguuggggaccgcCGCCAGUccagcccucugucugGGCc -3'
miRNA:   3'- -UCACC-----CCUCCCGUGU-------------GCGGUCGa--------------CCG- -5'
28944 3' -61.9 NC_006146.1 + 61832 0.69 0.499538
Target:  5'- uGGUGGGGgcaguGGGGCugGUGCCGGgacucccggGGCa -3'
miRNA:   3'- -UCACCCC-----UCCCGugUGCGGUCga-------CCG- -5'
28944 3' -61.9 NC_006146.1 + 62454 0.66 0.634615
Target:  5'- uAGUGGaccuugguacGGAcGGGCACuGCGuCCAcCUGGCc -3'
miRNA:   3'- -UCACC----------CCU-CCCGUG-UGC-GGUcGACCG- -5'
28944 3' -61.9 NC_006146.1 + 64653 0.67 0.624772
Target:  5'- --cGGGGccaGGGGCACGuCGCCguGGUaGGUg -3'
miRNA:   3'- ucaCCCC---UCCCGUGU-GCGG--UCGaCCG- -5'
28944 3' -61.9 NC_006146.1 + 65016 0.67 0.574791
Target:  5'- -uUGGGaaGGGGGCGCugGCC-GCUaucuugccuccccGGCu -3'
miRNA:   3'- ucACCC--CUCCCGUGugCGGuCGA-------------CCG- -5'
28944 3' -61.9 NC_006146.1 + 65452 0.68 0.508845
Target:  5'- --aGGaGGuGGGCACGa-CCAcGCUGGCg -3'
miRNA:   3'- ucaCC-CCuCCCGUGUgcGGU-CGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.