miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28944 3' -61.9 NC_006146.1 + 144677 0.68 0.527673
Target:  5'- gAGgagGGGGAggcGGGCGCccuUGCCuGgaGGCg -3'
miRNA:   3'- -UCa--CCCCU---CCCGUGu--GCGGuCgaCCG- -5'
28944 3' -61.9 NC_006146.1 + 136640 0.68 0.518225
Target:  5'- --cGGGGGGuGCACAacccccaGCCGGCccGGCg -3'
miRNA:   3'- ucaCCCCUCcCGUGUg------CGGUCGa-CCG- -5'
28944 3' -61.9 NC_006146.1 + 150535 0.71 0.355461
Target:  5'- cGGcUGGGGGucGGGCugGCcuGCCAGggGGCa -3'
miRNA:   3'- -UC-ACCCCU--CCCGugUG--CGGUCgaCCG- -5'
28944 3' -61.9 NC_006146.1 + 3789 0.75 0.206327
Target:  5'- gGGgggGGGGGGGGgGCACGCgGGggaUGGCc -3'
miRNA:   3'- -UCa--CCCCUCCCgUGUGCGgUCg--ACCG- -5'
28944 3' -61.9 NC_006146.1 + 144531 0.68 0.56605
Target:  5'- gAGUGGccagggaggacGGAGGGC-CugGCCuGCgGGg -3'
miRNA:   3'- -UCACC-----------CCUCCCGuGugCGGuCGaCCg -5'
28944 3' -61.9 NC_006146.1 + 71781 0.68 0.534325
Target:  5'- uGUGGagacgccugaggccGGAGGGCAgGCGCgGGacgugcggacCUGGCu -3'
miRNA:   3'- uCACC--------------CCUCCCGUgUGCGgUC----------GACCG- -5'
28944 3' -61.9 NC_006146.1 + 45559 0.68 0.518225
Target:  5'- --aGGGGAGGGaagACACGUCcGCcgaaguuuUGGCa -3'
miRNA:   3'- ucaCCCCUCCCg--UGUGCGGuCG--------ACCG- -5'
28944 3' -61.9 NC_006146.1 + 71424 0.76 0.178651
Target:  5'- cGUGGGaAGGGCGCG-GCCGGCauuuUGGCa -3'
miRNA:   3'- uCACCCcUCCCGUGUgCGGUCG----ACCG- -5'
28944 3' -61.9 NC_006146.1 + 156988 0.68 0.527673
Target:  5'- gAGgagGGGGAggcGGGCGCccuUGCCuGgaGGCa -3'
miRNA:   3'- -UCa--CCCCU---CCCGUGu--GCGGuCgaCCG- -5'
28944 3' -61.9 NC_006146.1 + 103381 0.78 0.136382
Target:  5'- cGUGGGGgagauAGGGCGCcUGCCAGUggggGGCg -3'
miRNA:   3'- uCACCCC-----UCCCGUGuGCGGUCGa---CCG- -5'
28944 3' -61.9 NC_006146.1 + 32810 0.68 0.518225
Target:  5'- --cGGGGGGuGCACAacccccaGCCGGCccGGCg -3'
miRNA:   3'- ucaCCCCUCcCGUGUg------CGGUCGa-CCG- -5'
28944 3' -61.9 NC_006146.1 + 147754 0.68 0.527673
Target:  5'- gAGgagGGGGAggcGGGCGCccuUGCCuGgaGGCa -3'
miRNA:   3'- -UCa--CCCCU---CCCGUGu--GCGGuCgaCCG- -5'
28944 3' -61.9 NC_006146.1 + 42881 0.7 0.445421
Target:  5'- uGGUGGGaggcgaagGGGGGCACguccuccccaagAC-CCGGUUGGCg -3'
miRNA:   3'- -UCACCC--------CUCCCGUG------------UGcGGUCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 153613 0.71 0.355461
Target:  5'- cGGcUGGGGGucGGGCugGCcuGCCAGggGGCa -3'
miRNA:   3'- -UC-ACCCCU--CCCGugUG--CGGUCgaCCG- -5'
28944 3' -61.9 NC_006146.1 + 141301 0.71 0.355461
Target:  5'- cGGcUGGGGGucGGGCugGCcuGCCAGggGGCa -3'
miRNA:   3'- -UC-ACCCCU--CCCGugUG--CGGUCgaCCG- -5'
28944 3' -61.9 NC_006146.1 + 9461 0.73 0.279079
Target:  5'- cGGUGGGcGcGGGGUcCGCGCCcuCUGGCa -3'
miRNA:   3'- -UCACCC-C-UCCCGuGUGCGGucGACCG- -5'
28944 3' -61.9 NC_006146.1 + 114351 0.67 0.575764
Target:  5'- aGGUGGacGGGGGCcuggcccgcgugACGCGUCAGCUgcugauggccGGCg -3'
miRNA:   3'- -UCACCc-CUCCCG------------UGUGCGGUCGA----------CCG- -5'
28944 3' -61.9 NC_006146.1 + 147609 0.68 0.56605
Target:  5'- gAGUGGccagggaggacGGAGGGC-CugGCCuGCgGGg -3'
miRNA:   3'- -UCACC-----------CCUCCCGuGugCGGuCGaCCg -5'
28944 3' -61.9 NC_006146.1 + 126625 0.68 0.556378
Target:  5'- cGGUGGucGGuGGGCACACcccgggGCCcGCaggGGCa -3'
miRNA:   3'- -UCACC--CCuCCCGUGUG------CGGuCGa--CCG- -5'
28944 3' -61.9 NC_006146.1 + 57921 0.68 0.545795
Target:  5'- -aUGcaGAGGGCGCugGCCGGCgccgccaUGGUg -3'
miRNA:   3'- ucACccCUCCCGUGugCGGUCG-------ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.