miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28944 5' -58.9 NC_006146.1 + 114046 0.75 0.277466
Target:  5'- cCAGCCccaGCCAAAG-CUGCCGCCCc-- -3'
miRNA:   3'- -GUCGGa--CGGUUUCaGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 157169 0.68 0.676303
Target:  5'- cCGGgCUGCCGGGGUCCcuCCGgCCGg- -3'
miRNA:   3'- -GUCgGACGGUUUCAGGc-GGCgGGUaa -5'
28944 5' -58.9 NC_006146.1 + 1676 0.67 0.68638
Target:  5'- uCAGCCcccgGCCGgcG-CCGCCGCgCGUg -3'
miRNA:   3'- -GUCGGa---CGGUuuCaGGCGGCGgGUAa -5'
28944 5' -58.9 NC_006146.1 + 117139 0.66 0.792332
Target:  5'- cCGGCgaGaCCuccGcCCGCCGCCCGUc -3'
miRNA:   3'- -GUCGgaC-GGuuuCaGGCGGCGGGUAa -5'
28944 5' -58.9 NC_006146.1 + 24207 0.69 0.59408
Target:  5'- gGGCCUG-CGAGGUUCuguuggggccgggGCCGCCCAc- -3'
miRNA:   3'- gUCGGACgGUUUCAGG-------------CGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 21062 0.69 0.595092
Target:  5'- -cGCUUcGCCGAGGcCCugGCCGCCCAc- -3'
miRNA:   3'- guCGGA-CGGUUUCaGG--CGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 126369 0.68 0.635722
Target:  5'- gCAGCCccCCAccGUCCuCCGCCCGUc -3'
miRNA:   3'- -GUCGGacGGUuuCAGGcGGCGGGUAa -5'
28944 5' -58.9 NC_006146.1 + 4370 0.68 0.649957
Target:  5'- cCAaCCUGCCAAGGaCCcugccgcuuggcacaGCCGCCCGa- -3'
miRNA:   3'- -GUcGGACGGUUUCaGG---------------CGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 117549 0.68 0.656051
Target:  5'- gGGCCaGCCAAGaccUCaCGCCGCCCc-- -3'
miRNA:   3'- gUCGGaCGGUUUc--AG-GCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 154091 0.68 0.676303
Target:  5'- cCGGgCUGCCGGGGUCCcuCCGgCCGg- -3'
miRNA:   3'- -GUCgGACGGUUUCAGGc-GGCgGGUaa -5'
28944 5' -58.9 NC_006146.1 + 144857 0.68 0.676303
Target:  5'- cCGGgCUGCCGGGGUCCcuCCGgCCGg- -3'
miRNA:   3'- -GUCgGACGGUUUCAGGc-GGCgGGUaa -5'
28944 5' -58.9 NC_006146.1 + 15038 0.68 0.656051
Target:  5'- -cGCCUgGCCAGGGcCCGCCggGCCUg-- -3'
miRNA:   3'- guCGGA-CGGUUUCaGGCGG--CGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 31829 0.72 0.440579
Target:  5'- aGGCCcgugGCCAAAGUCCagcuuCCGCCCu-- -3'
miRNA:   3'- gUCGGa---CGGUUUCAGGc----GGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 147935 0.68 0.676303
Target:  5'- cCGGgCUGCCGGGGUCCcuCCGgCCGg- -3'
miRNA:   3'- -GUCgGACGGUUUCAGGc-GGCgGGUaa -5'
28944 5' -58.9 NC_006146.1 + 127435 0.71 0.46799
Target:  5'- aCGGCC-GCCGAGGaggCUGCCGCuCCAg- -3'
miRNA:   3'- -GUCGGaCGGUUUCa--GGCGGCG-GGUaa -5'
28944 5' -58.9 NC_006146.1 + 78349 0.68 0.656051
Target:  5'- aGGUCUGagaccCCAGGGUguagCCGCUGCCCAg- -3'
miRNA:   3'- gUCGGAC-----GGUUUCA----GGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 151013 0.68 0.676303
Target:  5'- cCGGgCUGCCGGGGUCCcuCCGgCCGg- -3'
miRNA:   3'- -GUCgGACGGUUUCAGGc-GGCgGGUaa -5'
28944 5' -58.9 NC_006146.1 + 745 0.67 0.68638
Target:  5'- uCAGCCcccgGCCGgcG-CCGCCGCgCGUg -3'
miRNA:   3'- -GUCGGa---CGGUuuCaGGCGGCGgGUAa -5'
28944 5' -58.9 NC_006146.1 + 10533 0.69 0.574909
Target:  5'- gCGGCCUGCCAAGGgcgCUGagaCGCCa--- -3'
miRNA:   3'- -GUCGGACGGUUUCa--GGCg--GCGGguaa -5'
28944 5' -58.9 NC_006146.1 + 104332 0.69 0.605227
Target:  5'- aCGGCCUGCCugcg-CCGCCuGCgCCAc- -3'
miRNA:   3'- -GUCGGACGGuuucaGGCGG-CG-GGUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.