miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28944 5' -58.9 NC_006146.1 + 745 0.67 0.68638
Target:  5'- uCAGCCcccgGCCGgcG-CCGCCGCgCGUg -3'
miRNA:   3'- -GUCGGa---CGGUuuCaGGCGGCGgGUAa -5'
28944 5' -58.9 NC_006146.1 + 1676 0.67 0.68638
Target:  5'- uCAGCCcccgGCCGgcG-CCGCCGCgCGUg -3'
miRNA:   3'- -GUCGGa---CGGUuuCaGGCGGCGgGUAa -5'
28944 5' -58.9 NC_006146.1 + 2608 0.67 0.68638
Target:  5'- uCAGCCcccgGCCGgcG-CCGCCGCgCGUg -3'
miRNA:   3'- -GUCGGa---CGGUuuCaGGCGGCGgGUAa -5'
28944 5' -58.9 NC_006146.1 + 3540 0.67 0.68638
Target:  5'- uCAGCCcccgGCCGgcG-CCGCCGCgCGUg -3'
miRNA:   3'- -GUCGGa---CGGUuuCaGGCGGCGgGUAa -5'
28944 5' -58.9 NC_006146.1 + 4370 0.68 0.649957
Target:  5'- cCAaCCUGCCAAGGaCCcugccgcuuggcacaGCCGCCCGa- -3'
miRNA:   3'- -GUcGGACGGUUUCaGG---------------CGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 8865 0.69 0.605227
Target:  5'- aCAGCCUGCCc----CCGCC-CCCAg- -3'
miRNA:   3'- -GUCGGACGGuuucaGGCGGcGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 10533 0.69 0.574909
Target:  5'- gCGGCCUGCCAAGGgcgCUGagaCGCCa--- -3'
miRNA:   3'- -GUCGGACGGUUUCa--GGCg--GCGGguaa -5'
28944 5' -58.9 NC_006146.1 + 10770 1.04 0.002868
Target:  5'- cCAGCCUGCCAAAGUCCGCCGCCCAUUc -3'
miRNA:   3'- -GUCGGACGGUUUCAGGCGGCGGGUAA- -5'
28944 5' -58.9 NC_006146.1 + 10964 0.73 0.37547
Target:  5'- cCAGCCUGCCAcAGUCaccuaaagcaggcggCGCUGCCgGUg -3'
miRNA:   3'- -GUCGGACGGUuUCAG---------------GCGGCGGgUAa -5'
28944 5' -58.9 NC_006146.1 + 13253 0.67 0.71631
Target:  5'- uCAGCCUGguCCAGGGgCUGgUGCCCAa- -3'
miRNA:   3'- -GUCGGAC--GGUUUCaGGCgGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 13427 0.66 0.745599
Target:  5'- aGGCCcGCCc-GGUCaucaCGCUGCCCGUg -3'
miRNA:   3'- gUCGGaCGGuuUCAG----GCGGCGGGUAa -5'
28944 5' -58.9 NC_006146.1 + 13869 0.72 0.405498
Target:  5'- cCGGUgUGCCAgcGUCCcccgcaGCCGCCCAg- -3'
miRNA:   3'- -GUCGgACGGUuuCAGG------CGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 15038 0.68 0.656051
Target:  5'- -cGCCUgGCCAGGGcCCGCCggGCCUg-- -3'
miRNA:   3'- guCGGA-CGGUUUCaGGCGG--CGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 15710 0.66 0.744636
Target:  5'- gGGCCacugGCCGAGGagagggggcuguuUCCuCCGCCCAg- -3'
miRNA:   3'- gUCGGa---CGGUUUC-------------AGGcGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 16947 0.73 0.372227
Target:  5'- cCGGUgUGCCAgcGUCCccccaGCCGCCCAg- -3'
miRNA:   3'- -GUCGgACGGUuuCAGG-----CGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 20024 0.72 0.405498
Target:  5'- cCGGUgUGCCAgcGUCCcccgcaGCCGCCCAg- -3'
miRNA:   3'- -GUCGgACGGUuuCAGG------CGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 21062 0.69 0.595092
Target:  5'- -cGCUUcGCCGAGGcCCugGCCGCCCAc- -3'
miRNA:   3'- guCGGA-CGGUUUCaGG--CGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 21308 0.67 0.71631
Target:  5'- gCGGCCaGCCuccucucCCGCCGCCCc-- -3'
miRNA:   3'- -GUCGGaCGGuuuca--GGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 23102 0.72 0.405498
Target:  5'- cCGGUgUGCCAgcGUCCcccgcaGCCGCCCAg- -3'
miRNA:   3'- -GUCGgACGGUuuCAGG------CGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 23157 0.67 0.706392
Target:  5'- -cGCUUGCaCAGAGUCgcuCGCgGCCCGc- -3'
miRNA:   3'- guCGGACG-GUUUCAG---GCGgCGGGUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.