Results 1 - 20 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28944 | 5' | -58.9 | NC_006146.1 | + | 160601 | 0.71 | 0.486743 |
Target: 5'- -uGCUUGCCcccGAGGUCgGCCGCCUg-- -3' miRNA: 3'- guCGGACGG---UUUCAGgCGGCGGGuaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 158052 | 0.66 | 0.792332 |
Target: 5'- cCAGCCUcgccccaggcGCCuccucGGGUCCgGCCGCCgGa- -3' miRNA: 3'- -GUCGGA----------CGGu----UUCAGG-CGGCGGgUaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 157338 | 0.69 | 0.564875 |
Target: 5'- cCGGCCUGCUugcgcAGcCCGgCGCCCGg- -3' miRNA: 3'- -GUCGGACGGuu---UCaGGCgGCGGGUaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 157169 | 0.68 | 0.676303 |
Target: 5'- cCGGgCUGCCGGGGUCCcuCCGgCCGg- -3' miRNA: 3'- -GUCgGACGGUUUCAGGc-GGCgGGUaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 157057 | 0.66 | 0.792332 |
Target: 5'- gGGCC-GCCGGGGUCCcuCCGgCCGg- -3' miRNA: 3'- gUCGGaCGGUUUCAGGc-GGCgGGUaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 154974 | 0.66 | 0.783236 |
Target: 5'- cCAGCCUcgcccaggcGCCuccucGGGUCCgGCCGCCgGa- -3' miRNA: 3'- -GUCGGA---------CGGu----UUCAGG-CGGCGGgUaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 154091 | 0.68 | 0.676303 |
Target: 5'- cCGGgCUGCCGGGGUCCcuCCGgCCGg- -3' miRNA: 3'- -GUCgGACGGUUUCAGGc-GGCgGGUaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 153979 | 0.66 | 0.792332 |
Target: 5'- gGGCC-GCCGGGGUCCcuCCGgCCGg- -3' miRNA: 3'- gUCGGaCGGUUUCAGGc-GGCgGGUaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 151896 | 0.66 | 0.783236 |
Target: 5'- cCAGCCUcgcccaggcGCCuccucGGGUCCgGCCGCCgGa- -3' miRNA: 3'- -GUCGGA---------CGGu----UUCAGG-CGGCGGgUaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 151716 | 0.68 | 0.645892 |
Target: 5'- -cGCCUGCguaGAAGUaggcCUGCUGCCCAa- -3' miRNA: 3'- guCGGACGg--UUUCA----GGCGGCGGGUaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 151013 | 0.68 | 0.676303 |
Target: 5'- cCGGgCUGCCGGGGUCCcuCCGgCCGg- -3' miRNA: 3'- -GUCgGACGGUUUCAGGc-GGCgGGUaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 150901 | 0.66 | 0.792332 |
Target: 5'- gGGCC-GCCGGGGUCCcuCCGgCCGg- -3' miRNA: 3'- gUCGGaCGGUUUCAGGc-GGCgGGUaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 148818 | 0.66 | 0.783236 |
Target: 5'- cCAGCCUcgcccaggcGCCuccucGGGUCCgGCCGCCgGa- -3' miRNA: 3'- -GUCGGA---------CGGu----UUCAGG-CGGCGGgUaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 147935 | 0.68 | 0.676303 |
Target: 5'- cCGGgCUGCCGGGGUCCcuCCGgCCGg- -3' miRNA: 3'- -GUCgGACGGUUUCAGGc-GGCgGGUaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 147823 | 0.66 | 0.792332 |
Target: 5'- gGGCC-GCCGGGGUCCcuCCGgCCGg- -3' miRNA: 3'- gUCGGaCGGUUUCAGGc-GGCgGGUaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 146623 | 0.66 | 0.774006 |
Target: 5'- cCAGCCcccgGCCAGGGUCacgagGCCuggGUCCAUg -3' miRNA: 3'- -GUCGGa---CGGUUUCAGg----CGG---CGGGUAa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 145740 | 0.66 | 0.783236 |
Target: 5'- cCAGCCUcgcccaggcGCCuccucGGGUCCgGCCGCCgGa- -3' miRNA: 3'- -GUCGGA---------CGGu----UUCAGG-CGGCGGgUaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 144857 | 0.68 | 0.676303 |
Target: 5'- cCGGgCUGCCGGGGUCCcuCCGgCCGg- -3' miRNA: 3'- -GUCgGACGGUUUCAGGc-GGCgGGUaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 144745 | 0.66 | 0.792332 |
Target: 5'- gGGCC-GCCGGGGUCCcuCCGgCCGg- -3' miRNA: 3'- gUCGGaCGGUUUCAGGc-GGCgGGUaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 142663 | 0.66 | 0.783236 |
Target: 5'- cCAGCCUcgcccaggcGCCuccucGGGUCCgGCCGCCgGa- -3' miRNA: 3'- -GUCGGA---------CGGu----UUCAGG-CGGCGGgUaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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