miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28944 5' -58.9 NC_006146.1 + 142591 0.71 0.449616
Target:  5'- uGGCCUGUUgauucucagguuGAGGUCCGCaUGCCCAa- -3'
miRNA:   3'- gUCGGACGG------------UUUCAGGCG-GCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 141779 0.68 0.676303
Target:  5'- cCGGgCUGCCGGGGUCCcuCCGgCCGg- -3'
miRNA:   3'- -GUCgGACGGUUUCAGGc-GGCgGGUaa -5'
28944 5' -58.9 NC_006146.1 + 141668 0.66 0.792332
Target:  5'- gGGCC-GCCGGGGUCCcuCCGgCCGg- -3'
miRNA:   3'- gUCGGaCGGUUUCAGGc-GGCgGGUaa -5'
28944 5' -58.9 NC_006146.1 + 137788 0.66 0.783236
Target:  5'- gGGCCUgguccGCCGgauccgcuucggGGGUCCGCCgGUCCGg- -3'
miRNA:   3'- gUCGGA-----CGGU------------UUCAGGCGG-CGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 137563 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 137515 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 137470 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 137422 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 137377 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 137329 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 137284 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 137236 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 137191 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 137143 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 137098 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 137050 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 137005 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 136957 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 136912 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 136864 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.