miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28944 5' -58.9 NC_006146.1 + 24207 0.69 0.59408
Target:  5'- gGGCCUG-CGAGGUUCuguuggggccgggGCCGCCCAc- -3'
miRNA:   3'- gUCGGACgGUUUCAGG-------------CGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 26180 0.72 0.405498
Target:  5'- cCGGUgUGCCAgcGUCCcccgcaGCCGCCCAg- -3'
miRNA:   3'- -GUCGgACGGUuuCAGG------CGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 29258 0.72 0.405498
Target:  5'- cCGGUgUGCCAgcGUCCcccgcaGCCGCCCAg- -3'
miRNA:   3'- -GUCGgACGGUuuCAGG------CGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 31829 0.72 0.440579
Target:  5'- aGGCCcgugGCCAAAGUCCagcuuCCGCCCu-- -3'
miRNA:   3'- gUCGGa---CGGUUUCAGGc----GGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 33230 0.68 0.666191
Target:  5'- gCAGCCgggugGCCGccggcGGGUCCGCCGggccgcugcCCCGc- -3'
miRNA:   3'- -GUCGGa----CGGU-----UUCAGGCGGC---------GGGUaa -5'
28944 5' -58.9 NC_006146.1 + 33352 0.68 0.666191
Target:  5'- gCAGCCgggugGCCGccgguGGGUCCGCCGggccgcugcCCCGc- -3'
miRNA:   3'- -GUCGGa----CGGU-----UUCAGGCGGC---------GGGUaa -5'
28944 5' -58.9 NC_006146.1 + 43320 0.66 0.755178
Target:  5'- cCGGCCgGCgCGGccUCgGCCGCCCAg- -3'
miRNA:   3'- -GUCGGaCG-GUUucAGgCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 46743 0.67 0.71631
Target:  5'- aGGCCacgcugGCCAGGGUCCucGCCuCCCGa- -3'
miRNA:   3'- gUCGGa-----CGGUUUCAGG--CGGcGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 50357 0.72 0.414103
Target:  5'- cCAGCCUggggaucuugGCCAGcAGUcCCGCCGCCgCAUc -3'
miRNA:   3'- -GUCGGA----------CGGUU-UCA-GGCGGCGG-GUAa -5'
28944 5' -58.9 NC_006146.1 + 52821 0.66 0.783236
Target:  5'- aGGCCgUGCCcaggaugcgGAGGgccgagccgCCGCCGCCCc-- -3'
miRNA:   3'- gUCGG-ACGG---------UUUCa--------GGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 52930 0.72 0.440579
Target:  5'- gGGCgCUgGCCuc-GUCCGCCGCCUAUc -3'
miRNA:   3'- gUCG-GA-CGGuuuCAGGCGGCGGGUAa -5'
28944 5' -58.9 NC_006146.1 + 53029 0.67 0.706392
Target:  5'- gCGGCUgGCCGcGG-CCGCCGCCgAg- -3'
miRNA:   3'- -GUCGGaCGGUuUCaGGCGGCGGgUaa -5'
28944 5' -58.9 NC_006146.1 + 55527 0.67 0.696413
Target:  5'- gCGGCCaggGCCuccAGcUCCGCCGCCaCGc- -3'
miRNA:   3'- -GUCGGa--CGGuu-UC-AGGCGGCGG-GUaa -5'
28944 5' -58.9 NC_006146.1 + 56586 0.69 0.564875
Target:  5'- gCGGCCgggcGCC-GAGcCCGCCGCCgGUc -3'
miRNA:   3'- -GUCGGa---CGGuUUCaGGCGGCGGgUAa -5'
28944 5' -58.9 NC_006146.1 + 62318 0.7 0.515516
Target:  5'- gAGCCcagcgagGCCAGAGacgCCGCCGCCa--- -3'
miRNA:   3'- gUCGGa------CGGUUUCa--GGCGGCGGguaa -5'
28944 5' -58.9 NC_006146.1 + 66456 0.77 0.213179
Target:  5'- -uGCCUGCCGAGGg-CGCCGCCCc-- -3'
miRNA:   3'- guCGGACGGUUUCagGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 67725 0.68 0.62555
Target:  5'- gGGCaaagGCCucGGUCCGCucCGCCCAg- -3'
miRNA:   3'- gUCGga--CGGuuUCAGGCG--GCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 68932 0.66 0.745599
Target:  5'- gAGCCUcuaGCCAGAGcCCGgaGCCCc-- -3'
miRNA:   3'- gUCGGA---CGGUUUCaGGCggCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 78349 0.68 0.656051
Target:  5'- aGGUCUGagaccCCAGGGUguagCCGCUGCCCAg- -3'
miRNA:   3'- gUCGGAC-----GGUUUCA----GGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 99088 0.66 0.792332
Target:  5'- gGGCCcgcaGCC-AGGUCCGCaCGuCCCGc- -3'
miRNA:   3'- gUCGGa---CGGuUUCAGGCG-GC-GGGUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.