Results 21 - 40 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28944 | 5' | -58.9 | NC_006146.1 | + | 24207 | 0.69 | 0.59408 |
Target: 5'- gGGCCUG-CGAGGUUCuguuggggccgggGCCGCCCAc- -3' miRNA: 3'- gUCGGACgGUUUCAGG-------------CGGCGGGUaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 26180 | 0.72 | 0.405498 |
Target: 5'- cCGGUgUGCCAgcGUCCcccgcaGCCGCCCAg- -3' miRNA: 3'- -GUCGgACGGUuuCAGG------CGGCGGGUaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 29258 | 0.72 | 0.405498 |
Target: 5'- cCGGUgUGCCAgcGUCCcccgcaGCCGCCCAg- -3' miRNA: 3'- -GUCGgACGGUuuCAGG------CGGCGGGUaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 31829 | 0.72 | 0.440579 |
Target: 5'- aGGCCcgugGCCAAAGUCCagcuuCCGCCCu-- -3' miRNA: 3'- gUCGGa---CGGUUUCAGGc----GGCGGGuaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 33230 | 0.68 | 0.666191 |
Target: 5'- gCAGCCgggugGCCGccggcGGGUCCGCCGggccgcugcCCCGc- -3' miRNA: 3'- -GUCGGa----CGGU-----UUCAGGCGGC---------GGGUaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 33352 | 0.68 | 0.666191 |
Target: 5'- gCAGCCgggugGCCGccgguGGGUCCGCCGggccgcugcCCCGc- -3' miRNA: 3'- -GUCGGa----CGGU-----UUCAGGCGGC---------GGGUaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 43320 | 0.66 | 0.755178 |
Target: 5'- cCGGCCgGCgCGGccUCgGCCGCCCAg- -3' miRNA: 3'- -GUCGGaCG-GUUucAGgCGGCGGGUaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 46743 | 0.67 | 0.71631 |
Target: 5'- aGGCCacgcugGCCAGGGUCCucGCCuCCCGa- -3' miRNA: 3'- gUCGGa-----CGGUUUCAGG--CGGcGGGUaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 50357 | 0.72 | 0.414103 |
Target: 5'- cCAGCCUggggaucuugGCCAGcAGUcCCGCCGCCgCAUc -3' miRNA: 3'- -GUCGGA----------CGGUU-UCA-GGCGGCGG-GUAa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 52821 | 0.66 | 0.783236 |
Target: 5'- aGGCCgUGCCcaggaugcgGAGGgccgagccgCCGCCGCCCc-- -3' miRNA: 3'- gUCGG-ACGG---------UUUCa--------GGCGGCGGGuaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 52930 | 0.72 | 0.440579 |
Target: 5'- gGGCgCUgGCCuc-GUCCGCCGCCUAUc -3' miRNA: 3'- gUCG-GA-CGGuuuCAGGCGGCGGGUAa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 53029 | 0.67 | 0.706392 |
Target: 5'- gCGGCUgGCCGcGG-CCGCCGCCgAg- -3' miRNA: 3'- -GUCGGaCGGUuUCaGGCGGCGGgUaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 55527 | 0.67 | 0.696413 |
Target: 5'- gCGGCCaggGCCuccAGcUCCGCCGCCaCGc- -3' miRNA: 3'- -GUCGGa--CGGuu-UC-AGGCGGCGG-GUaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 56586 | 0.69 | 0.564875 |
Target: 5'- gCGGCCgggcGCC-GAGcCCGCCGCCgGUc -3' miRNA: 3'- -GUCGGa---CGGuUUCaGGCGGCGGgUAa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 62318 | 0.7 | 0.515516 |
Target: 5'- gAGCCcagcgagGCCAGAGacgCCGCCGCCa--- -3' miRNA: 3'- gUCGGa------CGGUUUCa--GGCGGCGGguaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 66456 | 0.77 | 0.213179 |
Target: 5'- -uGCCUGCCGAGGg-CGCCGCCCc-- -3' miRNA: 3'- guCGGACGGUUUCagGCGGCGGGuaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 67725 | 0.68 | 0.62555 |
Target: 5'- gGGCaaagGCCucGGUCCGCucCGCCCAg- -3' miRNA: 3'- gUCGga--CGGuuUCAGGCG--GCGGGUaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 68932 | 0.66 | 0.745599 |
Target: 5'- gAGCCUcuaGCCAGAGcCCGgaGCCCc-- -3' miRNA: 3'- gUCGGA---CGGUUUCaGGCggCGGGuaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 78349 | 0.68 | 0.656051 |
Target: 5'- aGGUCUGagaccCCAGGGUguagCCGCUGCCCAg- -3' miRNA: 3'- gUCGGAC-----GGUUUCA----GGCGGCGGGUaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 99088 | 0.66 | 0.792332 |
Target: 5'- gGGCCcgcaGCC-AGGUCCGCaCGuCCCGc- -3' miRNA: 3'- gUCGGa---CGGuUUCAGGCG-GC-GGGUaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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