miRNA display CGI


Results 41 - 60 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28944 5' -58.9 NC_006146.1 + 104332 0.69 0.605227
Target:  5'- aCGGCCUGCCugcg-CCGCCuGCgCCAc- -3'
miRNA:   3'- -GUCGGACGGuuucaGGCGG-CG-GGUaa -5'
28944 5' -58.9 NC_006146.1 + 104402 0.66 0.76465
Target:  5'- aGGCCgUGCCAAAaUCCGUCaGCaCCAg- -3'
miRNA:   3'- gUCGG-ACGGUUUcAGGCGG-CG-GGUaa -5'
28944 5' -58.9 NC_006146.1 + 106745 0.66 0.792332
Target:  5'- cCAGCCUGgCAGAcUCCGagGCCCu-- -3'
miRNA:   3'- -GUCGGACgGUUUcAGGCggCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 114046 0.75 0.277466
Target:  5'- cCAGCCccaGCCAAAG-CUGCCGCCCc-- -3'
miRNA:   3'- -GUCGGa--CGGUUUCaGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 115136 0.66 0.792332
Target:  5'- uGGCCucgcUGCCccuGGcCCGCCGCCgGg- -3'
miRNA:   3'- gUCGG----ACGGuu-UCaGGCGGCGGgUaa -5'
28944 5' -58.9 NC_006146.1 + 117139 0.66 0.792332
Target:  5'- cCGGCgaGaCCuccGcCCGCCGCCCGUc -3'
miRNA:   3'- -GUCGgaC-GGuuuCaGGCGGCGGGUAa -5'
28944 5' -58.9 NC_006146.1 + 117549 0.68 0.656051
Target:  5'- gGGCCaGCCAAGaccUCaCGCCGCCCc-- -3'
miRNA:   3'- gUCGGaCGGUUUc--AG-GCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 117913 0.68 0.635722
Target:  5'- gCGGCCacgGCCGgcAGGUCCGCCuGCgCAc- -3'
miRNA:   3'- -GUCGGa--CGGU--UUCAGGCGG-CGgGUaa -5'
28944 5' -58.9 NC_006146.1 + 121354 0.66 0.774006
Target:  5'- gGGCCUgGCCGGcguGGccUCCGCC-CCCAg- -3'
miRNA:   3'- gUCGGA-CGGUU---UC--AGGCGGcGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 122805 0.67 0.726156
Target:  5'- gCGGCCgagGCCGcgcuGUCgGCCGCCg--- -3'
miRNA:   3'- -GUCGGa--CGGUuu--CAGgCGGCGGguaa -5'
28944 5' -58.9 NC_006146.1 + 126369 0.68 0.635722
Target:  5'- gCAGCCccCCAccGUCCuCCGCCCGUc -3'
miRNA:   3'- -GUCGGacGGUuuCAGGcGGCGGGUAa -5'
28944 5' -58.9 NC_006146.1 + 127269 0.67 0.706392
Target:  5'- cCAGgCgGCCAcgccCCGCCGCCCAc- -3'
miRNA:   3'- -GUCgGaCGGUuucaGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 127435 0.71 0.46799
Target:  5'- aCGGCC-GCCGAGGaggCUGCCGCuCCAg- -3'
miRNA:   3'- -GUCGGaCGGUUUCa--GGCGGCG-GGUaa -5'
28944 5' -58.9 NC_006146.1 + 128782 0.68 0.665178
Target:  5'- aCGGCgUGCCAGAggcccucguagucGUgCGCCGUCCGc- -3'
miRNA:   3'- -GUCGgACGGUUU-------------CAgGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 130304 0.71 0.449616
Target:  5'- gCGGCaUGCgGAGGUUCgGCCGCCCAg- -3'
miRNA:   3'- -GUCGgACGgUUUCAGG-CGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 130397 0.71 0.449616
Target:  5'- aAGCCUccgaGgCAGAGUCCGCUGCCUu-- -3'
miRNA:   3'- gUCGGA----CgGUUUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 130609 0.66 0.745599
Target:  5'- uGGCCUGCCcggccucuuuGGcCCGCCuccGCCCGc- -3'
miRNA:   3'- gUCGGACGGuu--------UCaGGCGG---CGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 131087 0.66 0.792332
Target:  5'- aGGCCgccggGCCGucaacGG-CCGCCGuCCCAg- -3'
miRNA:   3'- gUCGGa----CGGUu----UCaGGCGGC-GGGUaa -5'
28944 5' -58.9 NC_006146.1 + 131218 0.67 0.706392
Target:  5'- gCGGCgCUGCaggcccaGGAGcCCGCCGCCUc-- -3'
miRNA:   3'- -GUCG-GACGg------UUUCaGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 135147 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.