miRNA display CGI


Results 61 - 80 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28944 5' -58.9 NC_006146.1 + 135890 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 135842 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 135797 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 135749 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 135705 0.78 0.174836
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGUc -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUAa -5'
28944 5' -58.9 NC_006146.1 + 135657 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 135612 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 135564 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 135519 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 135471 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 135426 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 135378 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 135333 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 135285 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 135240 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 135192 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 135147 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 131218 0.67 0.706392
Target:  5'- gCGGCgCUGCaggcccaGGAGcCCGCCGCCUc-- -3'
miRNA:   3'- -GUCG-GACGg------UUUCaGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 131087 0.66 0.792332
Target:  5'- aGGCCgccggGCCGucaacGG-CCGCCGuCCCAg- -3'
miRNA:   3'- gUCGGa----CGGUu----UCaGGCGGC-GGGUaa -5'
28944 5' -58.9 NC_006146.1 + 130609 0.66 0.745599
Target:  5'- uGGCCUGCCcggccucuuuGGcCCGCCuccGCCCGc- -3'
miRNA:   3'- gUCGGACGGuu--------UCaGGCGG---CGGGUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.