miRNA display CGI


Results 1 - 20 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28947 3' -62.9 NC_006146.1 + 123028 0.85 0.039571
Target:  5'- cCGAGGCCgagGCGGCCCAGGuCCGGGCg -3'
miRNA:   3'- -GCUCCGGag-UGUCGGGUCC-GGUCCGg -5'
28947 3' -62.9 NC_006146.1 + 57225 0.74 0.22228
Target:  5'- gGAGGCCg---GGCCCGGGCCcGaGCCa -3'
miRNA:   3'- gCUCCGGagugUCGGGUCCGGuC-CGG- -5'
28947 3' -62.9 NC_006146.1 + 76877 0.74 0.227514
Target:  5'- uCGGGGCCgu---GCCCcuGCCGGGCCg -3'
miRNA:   3'- -GCUCCGGaguguCGGGucCGGUCCGG- -5'
28947 3' -62.9 NC_006146.1 + 165945 0.66 0.640937
Target:  5'- gGAGGCuCUCGUGGCCCcugguccccgGGGCaCAgagcacGGCCa -3'
miRNA:   3'- gCUCCG-GAGUGUCGGG----------UCCG-GU------CCGG- -5'
28947 3' -62.9 NC_006146.1 + 151569 0.8 0.089979
Target:  5'- gCGAGGCCggGCAGgCCGGGC-AGGCCg -3'
miRNA:   3'- -GCUCCGGagUGUCgGGUCCGgUCCGG- -5'
28947 3' -62.9 NC_006146.1 + 154647 0.8 0.089979
Target:  5'- gCGAGGCCggGCAGgCCGGGC-AGGCCg -3'
miRNA:   3'- -GCUCCGGagUGUCgGGUCCGgUCCGG- -5'
28947 3' -62.9 NC_006146.1 + 24046 0.79 0.102057
Target:  5'- gCGGGGUgaCGCGGCCCcGaGCCAGGCCc -3'
miRNA:   3'- -GCUCCGgaGUGUCGGGuC-CGGUCCGG- -5'
28947 3' -62.9 NC_006146.1 + 584 0.79 0.110021
Target:  5'- aGGGGCCgggggCGCGGCCCGGcGCCAGcCCu -3'
miRNA:   3'- gCUCCGGa----GUGUCGGGUC-CGGUCcGG- -5'
28947 3' -62.9 NC_006146.1 + 3379 0.79 0.110021
Target:  5'- aGGGGCCgggggCGCGGCCCGGcGCCAGcCCu -3'
miRNA:   3'- gCUCCGGa----GUGUCGGGUC-CGGUCcGG- -5'
28947 3' -62.9 NC_006146.1 + 114967 0.74 0.22228
Target:  5'- gGGGGCaCgcaGCAGCCCAcGGCCgcggacaucaAGGCCa -3'
miRNA:   3'- gCUCCG-Gag-UGUCGGGU-CCGG----------UCCGG- -5'
28947 3' -62.9 NC_006146.1 + 49753 0.77 0.134187
Target:  5'- aGGGGCg-CGCGGCCCAGGCcCAGacGCCg -3'
miRNA:   3'- gCUCCGgaGUGUCGGGUCCG-GUC--CGG- -5'
28947 3' -62.9 NC_006146.1 + 2447 0.79 0.110021
Target:  5'- aGGGGCCgggggCGCGGCCCGGcGCCAGcCCu -3'
miRNA:   3'- gCUCCGGa----GUGUCGGGUC-CGGUCcGG- -5'
28947 3' -62.9 NC_006146.1 + 142335 0.8 0.089979
Target:  5'- gCGAGGCCggGCAGgCCGGGC-AGGCCg -3'
miRNA:   3'- -GCUCCGGagUGUCgGGUCCGgUCCGG- -5'
28947 3' -62.9 NC_006146.1 + 103563 0.77 0.144451
Target:  5'- cCGAGGaugggCUCGCccgGGCCUGGGCCGGGCUc -3'
miRNA:   3'- -GCUCCg----GAGUG---UCGGGUCCGGUCCGG- -5'
28947 3' -62.9 NC_006146.1 + 145413 0.8 0.089979
Target:  5'- gCGAGGCCggGCAGgCCGGGC-AGGCCg -3'
miRNA:   3'- -GCUCCGGagUGUCgGGUCCGgUCCGG- -5'
28947 3' -62.9 NC_006146.1 + 1515 0.79 0.110021
Target:  5'- aGGGGCCgggggCGCGGCCCGGcGCCAGcCCu -3'
miRNA:   3'- gCUCCGGa----GUGUCGGGUC-CGGUCcGG- -5'
28947 3' -62.9 NC_006146.1 + 23467 0.75 0.207192
Target:  5'- aCGAGGCC-C-UGGCCguGGCCAGGUa -3'
miRNA:   3'- -GCUCCGGaGuGUCGGguCCGGUCCGg -5'
28947 3' -62.9 NC_006146.1 + 105679 0.74 0.22228
Target:  5'- gCGAGGucaCCUCugGacGCCCGGGCUcccaGGGCCc -3'
miRNA:   3'- -GCUCC---GGAGugU--CGGGUCCGG----UCCGG- -5'
28947 3' -62.9 NC_006146.1 + 148491 0.8 0.089979
Target:  5'- gCGAGGCCggGCAGgCCGGGC-AGGCCg -3'
miRNA:   3'- -GCUCCGGagUGUCgGGUCCGgUCCGG- -5'
28947 3' -62.9 NC_006146.1 + 157724 0.8 0.089979
Target:  5'- gCGAGGCCggGCAGgCCGGGC-AGGCCg -3'
miRNA:   3'- -GCUCCGGagUGUCgGGUCCGgUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.