miRNA display CGI


Results 41 - 60 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28947 5' -53 NC_006146.1 + 61611 0.66 0.984764
Target:  5'- gCGGCCGGGgccgagaucccUCCCA--GCUAc-GACCu -3'
miRNA:   3'- gGCCGGUCC-----------GGGGUauUGAUuuCUGG- -5'
28947 5' -53 NC_006146.1 + 129557 0.66 0.984764
Target:  5'- aCC-GCCAGGCCCU--------GGGCCa -3'
miRNA:   3'- -GGcCGGUCCGGGGuauugauuUCUGG- -5'
28947 5' -53 NC_006146.1 + 142308 0.66 0.984764
Target:  5'- gCGGCUgaacccgaggAGGCgCCCGgAGC--GAGGCCg -3'
miRNA:   3'- gGCCGG----------UCCG-GGGUaUUGauUUCUGG- -5'
28947 5' -53 NC_006146.1 + 142066 0.66 0.984764
Target:  5'- cCCgGGCUgccgGGGUCCCuccGGCUGgccuGGGACCc -3'
miRNA:   3'- -GG-CCGG----UCCGGGGua-UUGAU----UUCUGG- -5'
28947 5' -53 NC_006146.1 + 157456 0.66 0.984764
Target:  5'- cCCgGGCUgccgGGGUCCCuccGGCUGgccuGGGACCc -3'
miRNA:   3'- -GG-CCGG----UCCGGGGua-UUGAU----UUCUGG- -5'
28947 5' -53 NC_006146.1 + 148222 0.66 0.984764
Target:  5'- cCCgGGCUgccgGGGUCCCuccGGCUGgccuGGGACCc -3'
miRNA:   3'- -GG-CCGG----UCCGGGGua-UUGAU----UUCUGG- -5'
28947 5' -53 NC_006146.1 + 154378 0.66 0.984764
Target:  5'- cCCgGGCUgccgGGGUCCCuccGGCUGgccuGGGACCc -3'
miRNA:   3'- -GG-CCGG----UCCGGGGua-UUGAU----UUCUGG- -5'
28947 5' -53 NC_006146.1 + 148464 0.66 0.984764
Target:  5'- gCGGCUgaacccgaggAGGCgCCCGgAGC--GAGGCCg -3'
miRNA:   3'- gGCCGG----------UCCG-GGGUaUUGauUUCUGG- -5'
28947 5' -53 NC_006146.1 + 151300 0.66 0.984764
Target:  5'- cCCgGGCUgccgGGGUCCCuccGGCUGgccuGGGACCc -3'
miRNA:   3'- -GG-CCGG----UCCGGGGua-UUGAU----UUCUGG- -5'
28947 5' -53 NC_006146.1 + 142690 0.66 0.984764
Target:  5'- uCCGGCCgccggaGGGCucuaaCCCGUcuCUGuccacuagagGGGACCg -3'
miRNA:   3'- -GGCCGG------UCCG-----GGGUAuuGAU----------UUCUGG- -5'
28947 5' -53 NC_006146.1 + 151580 0.66 0.983093
Target:  5'- gCCGGCCuGGUugccguagCCCAUGAUggagcggcgcguGACCc -3'
miRNA:   3'- -GGCCGGuCCG--------GGGUAUUGauuu--------CUGG- -5'
28947 5' -53 NC_006146.1 + 124130 0.66 0.982899
Target:  5'- gCCGGCCAGccauccGCCCgGggucgggaGGC-GAGGACCc -3'
miRNA:   3'- -GGCCGGUC------CGGGgUa-------UUGaUUUCUGG- -5'
28947 5' -53 NC_006146.1 + 62080 0.66 0.982899
Target:  5'- aCCGGUCcGGCauuauagCCGUGGCggcAGGACUg -3'
miRNA:   3'- -GGCCGGuCCGg------GGUAUUGau-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 50493 0.66 0.982899
Target:  5'- aUGGCCAGGuuggcccccaCCCCGUcGgUGAAGAa- -3'
miRNA:   3'- gGCCGGUCC----------GGGGUAuUgAUUUCUgg -5'
28947 5' -53 NC_006146.1 + 85400 0.66 0.982899
Target:  5'- aCCGGCguGGaggauCCCG--ACgagGAGACCa -3'
miRNA:   3'- -GGCCGguCCg----GGGUauUGau-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 71699 0.66 0.982899
Target:  5'- -aGGCCGcGGCCUCc---CUGGAGGCg -3'
miRNA:   3'- ggCCGGU-CCGGGGuauuGAUUUCUGg -5'
28947 5' -53 NC_006146.1 + 130015 0.66 0.982899
Target:  5'- gUCGuCCGGuGCUCCGUGAUgu-AGGCCc -3'
miRNA:   3'- -GGCcGGUC-CGGGGUAUUGauuUCUGG- -5'
28947 5' -53 NC_006146.1 + 3173 0.66 0.982899
Target:  5'- gCCGcGCCcccucAGGCCCCAcccGACgcgcgcucGGGCCc -3'
miRNA:   3'- -GGC-CGG-----UCCGGGGUa--UUGauu-----UCUGG- -5'
28947 5' -53 NC_006146.1 + 30495 0.66 0.982899
Target:  5'- uCCuGCCaacGGGCCCCAacacagagcUGACauccUGGAGAUCu -3'
miRNA:   3'- -GGcCGG---UCCGGGGU---------AUUG----AUUUCUGG- -5'
28947 5' -53 NC_006146.1 + 44350 0.66 0.982899
Target:  5'- uCCGuGaCCgcGGGCCCCGggGGC-AGAGACa -3'
miRNA:   3'- -GGC-C-GG--UCCGGGGUa-UUGaUUUCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.