miRNA display CGI


Results 41 - 60 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28947 5' -53 NC_006146.1 + 123374 0.78 0.482958
Target:  5'- gCUGGCCggGGGCCCCGcaaccUGGCUGGAacuGGCCg -3'
miRNA:   3'- -GGCCGG--UCCGGGGU-----AUUGAUUU---CUGG- -5'
28947 5' -53 NC_006146.1 + 11016 0.77 0.521825
Target:  5'- cCCGGCCucgAGGCCCUcu-GCgagGAGACCa -3'
miRNA:   3'- -GGCCGG---UCCGGGGuauUGau-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 169459 0.77 0.541712
Target:  5'- -aGGCCGGGCCUCcc--CUGGGGGCCu -3'
miRNA:   3'- ggCCGGUCCGGGGuauuGAUUUCUGG- -5'
28947 5' -53 NC_006146.1 + 167595 0.77 0.541712
Target:  5'- -aGGCCGGGCCUCcc--CUGGGGGCCu -3'
miRNA:   3'- ggCCGGUCCGGGGuauuGAUUUCUGG- -5'
28947 5' -53 NC_006146.1 + 168527 0.77 0.541712
Target:  5'- -aGGCCGGGCCUCcc--CUGGGGGCCu -3'
miRNA:   3'- ggCCGGUCCGGGGuauuGAUUUCUGG- -5'
28947 5' -53 NC_006146.1 + 170390 0.77 0.541712
Target:  5'- -aGGCCGGGCCUCcc--CUGGGGGCCu -3'
miRNA:   3'- ggCCGGUCCGGGGuauuGAUUUCUGG- -5'
28947 5' -53 NC_006146.1 + 4367 0.77 0.561845
Target:  5'- gUGGCCAcGGCCCCGcgGGCUccccAGGCCg -3'
miRNA:   3'- gGCCGGU-CCGGGGUa-UUGAuu--UCUGG- -5'
28947 5' -53 NC_006146.1 + 40989 0.77 0.561845
Target:  5'- gCCGcGCCGGcGCCCCAgGGCgcagAGAGACa -3'
miRNA:   3'- -GGC-CGGUC-CGGGGUaUUGa---UUUCUGg -5'
28947 5' -53 NC_006146.1 + 164497 0.76 0.571989
Target:  5'- -gGGCCAaagGGaCCCCAUGGCccaaGAGGACCg -3'
miRNA:   3'- ggCCGGU---CC-GGGGUAUUGa---UUUCUGG- -5'
28947 5' -53 NC_006146.1 + 99662 0.76 0.582176
Target:  5'- cCCcGCCAGGCCCCAgGAgUu--GACCa -3'
miRNA:   3'- -GGcCGGUCCGGGGUaUUgAuuuCUGG- -5'
28947 5' -53 NC_006146.1 + 59843 0.76 0.592399
Target:  5'- gCGGCuCAGGCuCCCGUGACUcAGGGAg- -3'
miRNA:   3'- gGCCG-GUCCG-GGGUAUUGA-UUUCUgg -5'
28947 5' -53 NC_006146.1 + 109583 0.76 0.592399
Target:  5'- gCCGGCUAGGCCaCCcgGGCaGGAcGCCg -3'
miRNA:   3'- -GGCCGGUCCGG-GGuaUUGaUUUcUGG- -5'
28947 5' -53 NC_006146.1 + 98556 0.76 0.592399
Target:  5'- gCCGGuCCAGGgCCCA-AGC-GAAGGCCu -3'
miRNA:   3'- -GGCC-GGUCCgGGGUaUUGaUUUCUGG- -5'
28947 5' -53 NC_006146.1 + 151031 0.76 0.602651
Target:  5'- uCCGGCC-GGCCUgGUGGacccgAGAGGCCg -3'
miRNA:   3'- -GGCCGGuCCGGGgUAUUga---UUUCUGG- -5'
28947 5' -53 NC_006146.1 + 69494 0.76 0.602651
Target:  5'- aUGGCCAGGCCCgAccuGCcAAAGAUCg -3'
miRNA:   3'- gGCCGGUCCGGGgUau-UGaUUUCUGG- -5'
28947 5' -53 NC_006146.1 + 12050 0.76 0.602651
Target:  5'- gCGGCCAccaGCCCCAUGugcucGCUuugcGAGGGCCg -3'
miRNA:   3'- gGCCGGUc--CGGGGUAU-----UGA----UUUCUGG- -5'
28947 5' -53 NC_006146.1 + 144875 0.76 0.602651
Target:  5'- uCCGGCC-GGCCUgGUGGacccgAGAGGCCg -3'
miRNA:   3'- -GGCCGGuCCGGGgUAUUga---UUUCUGG- -5'
28947 5' -53 NC_006146.1 + 141797 0.76 0.602651
Target:  5'- uCCGGCC-GGCCUgGUGGacccgAGAGGCCg -3'
miRNA:   3'- -GGCCGGuCCGGGgUAUUga---UUUCUGG- -5'
28947 5' -53 NC_006146.1 + 147953 0.76 0.602651
Target:  5'- uCCGGCC-GGCCUgGUGGacccgAGAGGCCg -3'
miRNA:   3'- -GGCCGGuCCGGGgUAUUga---UUUCUGG- -5'
28947 5' -53 NC_006146.1 + 101960 0.76 0.602651
Target:  5'- cCUGGCUagGGGCUCCGggcucUGGCUAGAGGCUc -3'
miRNA:   3'- -GGCCGG--UCCGGGGU-----AUUGAUUUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.