miRNA display CGI


Results 21 - 40 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28947 5' -53 NC_006146.1 + 33591 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 33405 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 33498 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 34520 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 34334 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 34892 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 35728 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 35635 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 35542 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 35449 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 35263 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 35356 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 35077 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 35170 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 34984 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 111647 0.8 0.375898
Target:  5'- gUCGGCCAGGCCCUG-AACacccaggcccaUGGAGGCCa -3'
miRNA:   3'- -GGCCGGUCCGGGGUaUUG-----------AUUUCUGG- -5'
28947 5' -53 NC_006146.1 + 155203 0.8 0.375898
Target:  5'- cUCGGCCAguGGCCCCGUGAUgAAGGugUa -3'
miRNA:   3'- -GGCCGGU--CCGGGGUAUUGaUUUCugG- -5'
28947 5' -53 NC_006146.1 + 147063 0.79 0.454746
Target:  5'- -gGGCCAGGUCCCGgcgUAGggAAAGGCCa -3'
miRNA:   3'- ggCCGGUCCGGGGU---AUUgaUUUCUGG- -5'
28947 5' -53 NC_006146.1 + 14540 0.79 0.464052
Target:  5'- cCUGGaCCGGGCCCUggAGCUGcuGGGCCg -3'
miRNA:   3'- -GGCC-GGUCCGGGGuaUUGAUu-UCUGG- -5'
28947 5' -53 NC_006146.1 + 46327 0.79 0.464052
Target:  5'- cUCGGCCGGGCuucugaccagCCgGUAGgUGAGGACCg -3'
miRNA:   3'- -GGCCGGUCCG----------GGgUAUUgAUUUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.