miRNA display CGI


Results 21 - 40 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28964 5' -53 NC_006146.1 + 99125 0.66 0.9817
Target:  5'- uCCGGCCucaggcgucuccacaGgGGCUCCAgcgaccggcaggUGGCgGAGGGCCa -3'
miRNA:   3'- -GGCCGG---------------U-CCGGGGU------------AUUGaUUUCUGG- -5'
28964 5' -53 NC_006146.1 + 2293 0.66 0.978659
Target:  5'- aCCGgaGCCAGGCCCUccuuccGACaguuccAGGCCa -3'
miRNA:   3'- -GGC--CGGUCCGGGGua----UUGauu---UCUGG- -5'
28964 5' -53 NC_006146.1 + 34262 0.66 0.978659
Target:  5'- gCCGGCUGGGgguugugcacCCCCcgAGCgucuGGACg -3'
miRNA:   3'- -GGCCGGUCC----------GGGGuaUUGauu-UCUGg -5'
28964 5' -53 NC_006146.1 + 10650 0.66 0.976268
Target:  5'- cCCGGCCAGGgCUguU-ACUGAAaAUCa -3'
miRNA:   3'- -GGCCGGUCCgGGguAuUGAUUUcUGG- -5'
28964 5' -53 NC_006146.1 + 6891 0.66 0.982899
Target:  5'- uUGGCCaacaAGGCCgCCGUGACgu-AGcauaACCu -3'
miRNA:   3'- gGCCGG----UCCGG-GGUAUUGauuUC----UGG- -5'
28964 5' -53 NC_006146.1 + 151580 0.66 0.983093
Target:  5'- gCCGGCCuGGUugccguagCCCAUGAUggagcggcgcguGACCc -3'
miRNA:   3'- -GGCCGGuCCG--------GGGUAUUGauuu--------CUGG- -5'
28964 5' -53 NC_006146.1 + 19537 0.66 0.984764
Target:  5'- -gGGCCcaGGGCCCCuaguccagagGACgGAGGAgCa -3'
miRNA:   3'- ggCCGG--UCCGGGGua--------UUGaUUUCUgG- -5'
28964 5' -53 NC_006146.1 + 49009 0.66 0.982307
Target:  5'- aCCGGCUAGGagccgcagggcguuCUCCGgGGCgcggcccGAGACCg -3'
miRNA:   3'- -GGCCGGUCC--------------GGGGUaUUGau-----UUCUGG- -5'
28964 5' -53 NC_006146.1 + 149978 0.66 0.982107
Target:  5'- -gGGCCAGGgCCUgcaggucggccgGACUcAGGGCCu -3'
miRNA:   3'- ggCCGGUCCgGGGua----------UUGAuUUCUGG- -5'
28964 5' -53 NC_006146.1 + 128754 0.66 0.978659
Target:  5'- uCCGuGCCAGGCCgaCAc-GCUcAGGGACa -3'
miRNA:   3'- -GGC-CGGUCCGGg-GUauUGA-UUUCUGg -5'
28964 5' -53 NC_006146.1 + 60007 0.66 0.979563
Target:  5'- -aGGCCAacgcGGCCCCGUccccgccugcgcccgAGCccGAGACg -3'
miRNA:   3'- ggCCGGU----CCGGGGUA---------------UUGauUUCUGg -5'
28964 5' -53 NC_006146.1 + 63438 0.66 0.980867
Target:  5'- gCGGCCAuGCgCCAcaAGCUGAAGAa- -3'
miRNA:   3'- gGCCGGUcCGgGGUa-UUGAUUUCUgg -5'
28964 5' -53 NC_006146.1 + 33715 0.66 0.982899
Target:  5'- cCCGGCCuacCCCCGUu-CUGGAGcuCCu -3'
miRNA:   3'- -GGCCGGuccGGGGUAuuGAUUUCu-GG- -5'
28964 5' -53 NC_006146.1 + 117874 0.66 0.978659
Target:  5'- gCGGCUgagauGGGCaCCCGaGGCUGGucaucGACCc -3'
miRNA:   3'- gGCCGG-----UCCG-GGGUaUUGAUUu----CUGG- -5'
28964 5' -53 NC_006146.1 + 138092 0.66 0.978659
Target:  5'- gCCGGCUGGGgguugugcacCCCCcgAGCgucuGGACg -3'
miRNA:   3'- -GGCCGGUCC----------GGGGuaUUGauu-UCUGg -5'
28964 5' -53 NC_006146.1 + 55527 0.66 0.982899
Target:  5'- gCGGCCAGGgCCUccAGCUcc--GCCg -3'
miRNA:   3'- gGCCGGUCCgGGGuaUUGAuuucUGG- -5'
28964 5' -53 NC_006146.1 + 94159 0.66 0.982899
Target:  5'- cUCGuGCCcguGGGCCuCCAcgaAGCUGucGGCCu -3'
miRNA:   3'- -GGC-CGG---UCCGG-GGUa--UUGAUuuCUGG- -5'
28964 5' -53 NC_006146.1 + 84531 0.66 0.976268
Target:  5'- gCCGGUaCAGGCgCCGUGGCaggugguuGGGCa -3'
miRNA:   3'- -GGCCG-GUCCGgGGUAUUGauu-----UCUGg -5'
28964 5' -53 NC_006146.1 + 162472 0.66 0.982899
Target:  5'- cCCGaGCUcuccuGGuCCCCAggguccgGACUauGAAGACCc -3'
miRNA:   3'- -GGC-CGGu----CC-GGGGUa------UUGA--UUUCUGG- -5'
28964 5' -53 NC_006146.1 + 167871 0.66 0.980867
Target:  5'- aUCGGCgCGGgggaGCCCCGgGGCggcccGGGGACCc -3'
miRNA:   3'- -GGCCG-GUC----CGGGGUaUUGa----UUUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.