miRNA display CGI


Results 41 - 60 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28964 5' -53 NC_006146.1 + 167871 0.66 0.980867
Target:  5'- aUCGGCgCGGgggaGCCCCGgGGCggcccGGGGACCc -3'
miRNA:   3'- -GGCCG-GUC----CGGGGUaUUGa----UUUCUGG- -5'
28964 5' -53 NC_006146.1 + 120182 0.66 0.976268
Target:  5'- cCCGaCCGGGCCCUcgu-CUAu-GACCc -3'
miRNA:   3'- -GGCcGGUCCGGGGuauuGAUuuCUGG- -5'
28964 5' -53 NC_006146.1 + 123551 0.66 0.984764
Target:  5'- aCGGU--GGCCCCGUAGCacgugccGAGGAUg -3'
miRNA:   3'- gGCCGguCCGGGGUAUUGa------UUUCUGg -5'
28964 5' -53 NC_006146.1 + 138092 0.66 0.978659
Target:  5'- gCCGGCUGGGgguugugcacCCCCcgAGCgucuGGACg -3'
miRNA:   3'- -GGCCGGUCC----------GGGGuaUUGauu-UCUGg -5'
28964 5' -53 NC_006146.1 + 150793 0.66 0.98647
Target:  5'- -gGuGCCGGGCCaCCGUGuccaGCUuguagucagAGAGGCUg -3'
miRNA:   3'- ggC-CGGUCCGG-GGUAU----UGA---------UUUCUGG- -5'
28964 5' -53 NC_006146.1 + 169735 0.66 0.980867
Target:  5'- aUCGGCgCGGgggaGCCCCGgGGCggcccGGGGACCc -3'
miRNA:   3'- -GGCCG-GUC----CGGGGUaUUGa----UUUCUGG- -5'
28964 5' -53 NC_006146.1 + 128754 0.66 0.978659
Target:  5'- uCCGuGCCAGGCCgaCAc-GCUcAGGGACa -3'
miRNA:   3'- -GGC-CGGUCCGGg-GUauUGA-UUUCUGg -5'
28964 5' -53 NC_006146.1 + 63438 0.66 0.980867
Target:  5'- gCGGCCAuGCgCCAcaAGCUGAAGAa- -3'
miRNA:   3'- gGCCGGUcCGgGGUa-UUGAUUUCUgg -5'
28964 5' -53 NC_006146.1 + 167177 0.66 0.976268
Target:  5'- -gGGCCAcgcGGCCCCc-----AGAGACCc -3'
miRNA:   3'- ggCCGGU---CCGGGGuauugaUUUCUGG- -5'
28964 5' -53 NC_006146.1 + 33715 0.66 0.982899
Target:  5'- cCCGGCCuacCCCCGUu-CUGGAGcuCCu -3'
miRNA:   3'- -GGCCGGuccGGGGUAuuGAUUUCu-GG- -5'
28964 5' -53 NC_006146.1 + 55597 0.66 0.980867
Target:  5'- -aGGUCuGGUCCCAgAGC--AGGGCCu -3'
miRNA:   3'- ggCCGGuCCGGGGUaUUGauUUCUGG- -5'
28964 5' -53 NC_006146.1 + 135699 0.66 0.977247
Target:  5'- gUGGCCGGGCCgcugCCGgguccGCUGcccguccuggagcucGGGGCCg -3'
miRNA:   3'- gGCCGGUCCGG----GGUau---UGAU---------------UUCUGG- -5'
28964 5' -53 NC_006146.1 + 161790 0.66 0.978659
Target:  5'- aCCGGCUccacgguggauAGGCUCCcug---GGAGACCc -3'
miRNA:   3'- -GGCCGG-----------UCCGGGGuauugaUUUCUGG- -5'
28964 5' -53 NC_006146.1 + 34262 0.66 0.978659
Target:  5'- gCCGGCUGGGgguugugcacCCCCcgAGCgucuGGACg -3'
miRNA:   3'- -GGCCGGUCC----------GGGGuaUUGauu-UCUGg -5'
28964 5' -53 NC_006146.1 + 170679 0.66 0.98647
Target:  5'- -aGGCCAGgggcGCCCCG------GGGACCg -3'
miRNA:   3'- ggCCGGUC----CGGGGUauugauUUCUGG- -5'
28964 5' -53 NC_006146.1 + 25693 0.66 0.984764
Target:  5'- -gGGCCcaGGGCCCCuaguccagagGACgGAGGAgCa -3'
miRNA:   3'- ggCCGG--UCCGGGGua--------UUGaUUUCUgG- -5'
28964 5' -53 NC_006146.1 + 168803 0.66 0.980867
Target:  5'- aUCGGCgCGGgggaGCCCCGgGGCggcccGGGGACCc -3'
miRNA:   3'- -GGCCG-GUC----CGGGGUaUUGa----UUUCUGG- -5'
28964 5' -53 NC_006146.1 + 169413 0.66 0.976268
Target:  5'- -aGGCC-GGCUgCCAUGGuCaGGAGGCCa -3'
miRNA:   3'- ggCCGGuCCGG-GGUAUU-GaUUUCUGG- -5'
28964 5' -53 NC_006146.1 + 19537 0.66 0.984764
Target:  5'- -gGGCCcaGGGCCCCuaguccagagGACgGAGGAgCa -3'
miRNA:   3'- ggCCGG--UCCGGGGua--------UUGaUUUCUgG- -5'
28964 5' -53 NC_006146.1 + 49009 0.66 0.982307
Target:  5'- aCCGGCUAGGagccgcagggcguuCUCCGgGGCgcggcccGAGACCg -3'
miRNA:   3'- -GGCCGGUCC--------------GGGGUaUUGau-----UUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.