miRNA display CGI


Results 61 - 80 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28964 5' -53 NC_006146.1 + 2293 0.66 0.978659
Target:  5'- aCCGgaGCCAGGCCCUccuuccGACaguuccAGGCCa -3'
miRNA:   3'- -GGC--CGGUCCGGGGua----UUGauu---UCUGG- -5'
28964 5' -53 NC_006146.1 + 115259 0.66 0.980005
Target:  5'- uCCGGCUgcugcaccccucggGGGCCCUcuucuacGACUAcguguacGAGGCCc -3'
miRNA:   3'- -GGCCGG--------------UCCGGGGua-----UUGAU-------UUCUGG- -5'
28964 5' -53 NC_006146.1 + 51580 0.66 0.980867
Target:  5'- gCCGGgaGGGgCCCGggggAGCcagAGGGGCCa -3'
miRNA:   3'- -GGCCggUCCgGGGUa---UUGa--UUUCUGG- -5'
28964 5' -53 NC_006146.1 + 150793 0.66 0.98647
Target:  5'- -gGuGCCGGGCCaCCGUGuccaGCUuguagucagAGAGGCUg -3'
miRNA:   3'- ggC-CGGUCCGG-GGUAU----UGA---------UUUCUGG- -5'
28964 5' -53 NC_006146.1 + 122554 0.66 0.980867
Target:  5'- gCCGGCCcgcuGGCCa---GACUGGAcGCCu -3'
miRNA:   3'- -GGCCGGu---CCGGgguaUUGAUUUcUGG- -5'
28964 5' -53 NC_006146.1 + 75883 0.66 0.976268
Target:  5'- gUCGG-CGGGCuCCCGUAAUUccAGcACCu -3'
miRNA:   3'- -GGCCgGUCCG-GGGUAUUGAuuUC-UGG- -5'
28964 5' -53 NC_006146.1 + 145865 0.66 0.978659
Target:  5'- gCUGGUCucgcuugcuGGCCCCaAUGGCcgcGGGCCu -3'
miRNA:   3'- -GGCCGGu--------CCGGGG-UAUUGauuUCUGG- -5'
28964 5' -53 NC_006146.1 + 158178 0.66 0.978659
Target:  5'- gCUGGUCucgcuugcuGGCCCCaAUGGCcgcGGGCCu -3'
miRNA:   3'- -GGCCGGu--------CCGGGG-UAUUGauuUCUGG- -5'
28964 5' -53 NC_006146.1 + 34262 0.66 0.978659
Target:  5'- gCCGGCUGGGgguugugcacCCCCcgAGCgucuGGACg -3'
miRNA:   3'- -GGCCGGUCC----------GGGGuaUUGauu-UCUGg -5'
28964 5' -53 NC_006146.1 + 67799 0.66 0.977961
Target:  5'- gCGGCCAGGCUCUgccccgccucggaaGUAaacaGCUccguGAGGugCg -3'
miRNA:   3'- gGCCGGUCCGGGG--------------UAU----UGA----UUUCugG- -5'
28964 5' -53 NC_006146.1 + 152021 0.66 0.978659
Target:  5'- gCUGGUCucgcuugcuGGCCCCaAUGGCcgcGGGCCu -3'
miRNA:   3'- -GGCCGGu--------CCGGGG-UAUUGauuUCUGG- -5'
28964 5' -53 NC_006146.1 + 130171 0.66 0.978659
Target:  5'- cCCGGCCGaGUCgUAU--UUAAAGGCCa -3'
miRNA:   3'- -GGCCGGUcCGGgGUAuuGAUUUCUGG- -5'
28964 5' -53 NC_006146.1 + 158827 0.66 0.977247
Target:  5'- aCGGCCGGGgCCCGgcccucgcaaagcgAGCacauGGGGCUg -3'
miRNA:   3'- gGCCGGUCCgGGGUa-------------UUGau--UUCUGG- -5'
28964 5' -53 NC_006146.1 + 19537 0.66 0.984764
Target:  5'- -gGGCCcaGGGCCCCuaguccagagGACgGAGGAgCa -3'
miRNA:   3'- ggCCGG--UCCGGGGua--------UUGaUUUCUgG- -5'
28964 5' -53 NC_006146.1 + 160668 0.66 0.982899
Target:  5'- -aGGCCuucaGGGCCggcaCAUGACc-AGGGCCg -3'
miRNA:   3'- ggCCGG----UCCGGg---GUAUUGauUUCUGG- -5'
28964 5' -53 NC_006146.1 + 149978 0.66 0.982107
Target:  5'- -gGGCCAGGgCCUgcaggucggccgGACUcAGGGCCu -3'
miRNA:   3'- ggCCGGUCCgGGGua----------UUGAuUUCUGG- -5'
28964 5' -53 NC_006146.1 + 103869 0.66 0.986633
Target:  5'- cCCGGCCGacugucGGCUCCcgGACacgcggcucacccGGGCCa -3'
miRNA:   3'- -GGCCGGU------CCGGGGuaUUGauu----------UCUGG- -5'
28964 5' -53 NC_006146.1 + 25693 0.66 0.984764
Target:  5'- -gGGCCcaGGGCCCCuaguccagagGACgGAGGAgCa -3'
miRNA:   3'- ggCCGG--UCCGGGGua--------UUGaUUUCUgG- -5'
28964 5' -53 NC_006146.1 + 3173 0.66 0.982899
Target:  5'- gCCGcGCCcccucAGGCCCCAcccGACgcgcgcucGGGCCc -3'
miRNA:   3'- -GGC-CGG-----UCCGGGGUa--UUGauu-----UCUGG- -5'
28964 5' -53 NC_006146.1 + 151580 0.66 0.983093
Target:  5'- gCCGGCCuGGUugccguagCCCAUGAUggagcggcgcguGACCc -3'
miRNA:   3'- -GGCCGGuCCG--------GGGUAUUGauuu--------CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.