Results 61 - 80 of 590 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28964 | 5' | -53 | NC_006146.1 | + | 6891 | 0.66 | 0.982899 |
Target: 5'- uUGGCCaacaAGGCCgCCGUGACgu-AGcauaACCu -3' miRNA: 3'- gGCCGG----UCCGG-GGUAUUGauuUC----UGG- -5' |
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28964 | 5' | -53 | NC_006146.1 | + | 160668 | 0.66 | 0.982899 |
Target: 5'- -aGGCCuucaGGGCCggcaCAUGACc-AGGGCCg -3' miRNA: 3'- ggCCGG----UCCGGg---GUAUUGauUUCUGG- -5' |
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28964 | 5' | -53 | NC_006146.1 | + | 162472 | 0.66 | 0.982899 |
Target: 5'- cCCGaGCUcuccuGGuCCCCAggguccgGACUauGAAGACCc -3' miRNA: 3'- -GGC-CGGu----CC-GGGGUa------UUGA--UUUCUGG- -5' |
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28964 | 5' | -53 | NC_006146.1 | + | 62080 | 0.66 | 0.982899 |
Target: 5'- aCCGGUCcGGCauuauagCCGUGGCggcAGGACUg -3' miRNA: 3'- -GGCCGGuCCGg------GGUAUUGau-UUCUGG- -5' |
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28964 | 5' | -53 | NC_006146.1 | + | 30495 | 0.66 | 0.982899 |
Target: 5'- uCCuGCCaacGGGCCCCAacacagagcUGACauccUGGAGAUCu -3' miRNA: 3'- -GGcCGG---UCCGGGGU---------AUUG----AUUUCUGG- -5' |
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28964 | 5' | -53 | NC_006146.1 | + | 33715 | 0.66 | 0.982899 |
Target: 5'- cCCGGCCuacCCCCGUu-CUGGAGcuCCu -3' miRNA: 3'- -GGCCGGuccGGGGUAuuGAUUUCu-GG- -5' |
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28964 | 5' | -53 | NC_006146.1 | + | 52595 | 0.66 | 0.982899 |
Target: 5'- aCCGaGCUGGGCacguCCGUcAGCU--GGGCCa -3' miRNA: 3'- -GGC-CGGUCCGg---GGUA-UUGAuuUCUGG- -5' |
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28964 | 5' | -53 | NC_006146.1 | + | 80841 | 0.66 | 0.982899 |
Target: 5'- aCGGCCAuGGCCCaCGUGcaUAAcGcACCc -3' miRNA: 3'- gGCCGGU-CCGGG-GUAUugAUUuC-UGG- -5' |
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28964 | 5' | -53 | NC_006146.1 | + | 55527 | 0.66 | 0.982899 |
Target: 5'- gCGGCCAGGgCCUccAGCUcc--GCCg -3' miRNA: 3'- gGCCGGUCCgGGGuaUUGAuuucUGG- -5' |
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28964 | 5' | -53 | NC_006146.1 | + | 94159 | 0.66 | 0.982899 |
Target: 5'- cUCGuGCCcguGGGCCuCCAcgaAGCUGucGGCCu -3' miRNA: 3'- -GGC-CGG---UCCGG-GGUa--UUGAUuuCUGG- -5' |
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28964 | 5' | -53 | NC_006146.1 | + | 42799 | 0.66 | 0.982703 |
Target: 5'- cUCGGCCAGGUuggcgguCUCGcagAGCguguAGACCa -3' miRNA: 3'- -GGCCGGUCCG-------GGGUa--UUGauu-UCUGG- -5' |
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28964 | 5' | -53 | NC_006146.1 | + | 49009 | 0.66 | 0.982307 |
Target: 5'- aCCGGCUAGGagccgcagggcguuCUCCGgGGCgcggcccGAGACCg -3' miRNA: 3'- -GGCCGGUCC--------------GGGGUaUUGau-----UUCUGG- -5' |
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28964 | 5' | -53 | NC_006146.1 | + | 149978 | 0.66 | 0.982107 |
Target: 5'- -gGGCCAGGgCCUgcaggucggccgGACUcAGGGCCu -3' miRNA: 3'- ggCCGGUCCgGGGua----------UUGAuUUCUGG- -5' |
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28964 | 5' | -53 | NC_006146.1 | + | 99125 | 0.66 | 0.9817 |
Target: 5'- uCCGGCCucaggcgucuccacaGgGGCUCCAgcgaccggcaggUGGCgGAGGGCCa -3' miRNA: 3'- -GGCCGG---------------U-CCGGGGU------------AUUGaUUUCUGG- -5' |
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28964 | 5' | -53 | NC_006146.1 | + | 167090 | 0.66 | 0.980867 |
Target: 5'- cCCcGCCuGGCcugaCCCAgaccUGACUGuGGGCCa -3' miRNA: 3'- -GGcCGGuCCG----GGGU----AUUGAUuUCUGG- -5' |
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28964 | 5' | -53 | NC_006146.1 | + | 63438 | 0.66 | 0.980867 |
Target: 5'- gCGGCCAuGCgCCAcaAGCUGAAGAa- -3' miRNA: 3'- gGCCGGUcCGgGGUa-UUGAUUUCUgg -5' |
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28964 | 5' | -53 | NC_006146.1 | + | 167871 | 0.66 | 0.980867 |
Target: 5'- aUCGGCgCGGgggaGCCCCGgGGCggcccGGGGACCc -3' miRNA: 3'- -GGCCG-GUC----CGGGGUaUUGa----UUUCUGG- -5' |
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28964 | 5' | -53 | NC_006146.1 | + | 168803 | 0.66 | 0.980867 |
Target: 5'- aUCGGCgCGGgggaGCCCCGgGGCggcccGGGGACCc -3' miRNA: 3'- -GGCCG-GUC----CGGGGUaUUGa----UUUCUGG- -5' |
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28964 | 5' | -53 | NC_006146.1 | + | 122554 | 0.66 | 0.980867 |
Target: 5'- gCCGGCCcgcuGGCCa---GACUGGAcGCCu -3' miRNA: 3'- -GGCCGGu---CCGGgguaUUGAUUUcUGG- -5' |
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28964 | 5' | -53 | NC_006146.1 | + | 61438 | 0.66 | 0.980867 |
Target: 5'- aCGGCCGGGCUgaUCAgcuUUGAGGugUc -3' miRNA: 3'- gGCCGGUCCGG--GGUauuGAUUUCugG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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